View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10573_high_1 (Length: 351)
Name: NF10573_high_1
Description: NF10573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10573_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 53 - 333
Target Start/End: Original strand, 13251845 - 13252125
Alignment:
| Q |
53 |
gcatgattacactaatcaaacgcacaaactttcgatttagaaatgacttatagatcaagaattccatctagattatacattatataggtgtggtggagaa |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13251845 |
gcatgattacactaatcaaacgcacaaactttcgatttagaaatgacttatagatcaagaattccatctagattatacattatataggtgtggtggagaa |
13251944 |
T |
|
| Q |
153 |
atcttactagaaagttgtattacatgatacattatacaaatcaagttgcaaaaagagaaggattagctgaagcattgccaacttgaacttcaagtaattc |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13251945 |
atcttactagaaagttgtattacatgatacattatacaaatcaagttgcaaaaagagaaggattagctgaagcattgccaacttgaacttcaagtaattc |
13252044 |
T |
|
| Q |
253 |
caaacgacgctccaatacatcaagcttctcattcaatgaagctaatttactctttgttgtagcctctgaaataacaacaac |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13252045 |
caaacgacgctccaatacatcaagcttctcattcaatgaagctaatttactctttgttgtagcctctgaaataacaacaac |
13252125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University