View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10573_high_2 (Length: 351)
Name: NF10573_high_2
Description: NF10573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10573_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 52584916 - 52585235
Alignment:
| Q |
18 |
ttaataagacattaacatagaagtggtgaatccgtactaggtgcacgaagccctattgaggttgagcagtggattcattggtgagcataatcagtggtca |
117 |
Q |
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| T |
52584916 |
ttaataagacattaacatagaagtggtgaatccgtactaggtgcacgaagccctattgaggttgagcagtggattcattggtgagcataatcagtggtca |
52585015 |
T |
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| Q |
118 |
caatcaaatcccaagtttcatgtttgaatattgcagctctagtattcagtaagataaatgtgatagctc-aaactaacttggaggagtactattactata |
216 |
Q |
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| T |
52585016 |
caatcaaatcccaagtttcatgtttgaatattgcagctctagtattcagtaagataaatgtgatagctcaaaactaacttggaggagtactattactata |
52585115 |
T |
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| Q |
217 |
cactgcacatgccaaaatcatacttaaatttatgaccacttgggatatggtgtcaaaacaaggtagattgtgttaggatttaagagaactgatttgtgaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52585116 |
cactgcacatgccaaaatcatacttaaatttatgaccacttgggatatggtgtcaaaacaaggtagattgtgttaggatttaagagaactgatttgtgaa |
52585215 |
T |
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| Q |
317 |
agagtatgtagccaaatttt |
336 |
Q |
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|||||||||||||||||||| |
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| T |
52585216 |
agagtatgtagccaaatttt |
52585235 |
T |
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