View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10573_low_5 (Length: 239)
Name: NF10573_low_5
Description: NF10573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10573_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 80 - 238
Target Start/End: Complemental strand, 6035697 - 6035540
Alignment:
| Q |
80 |
ttggttgattgatttagccaatttttggagtactgaagaccttattaaattcatcaacatacaatcgaactctatcgtacctcaaatctaaggtaacaca |
179 |
Q |
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| T |
6035697 |
ttggttgattgatt-agccaatttttggagtactgaagacattattaaattcatcaacatacaatcgaactctatcgtacctcaaatcaaaggtaacaca |
6035599 |
T |
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| Q |
180 |
aaaaccaggggacaccacttctattttaacctcagacatctcttcctttatttttctct |
238 |
Q |
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| T |
6035598 |
tgaaccaggggacaccacttctattttaacctcagacatctcttcctttatttttctct |
6035540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 239
Target Start/End: Original strand, 6085511 - 6085678
Alignment:
| Q |
71 |
gaacaatatttggttgattgatttagccaatttttggagtactgaagaccttattaaattcatcaacatacaatcgaactctatcgtacctcaaatctaa |
170 |
Q |
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||||||||||| |||||| || | | |||||| ||||||| || | |||||||||| ||||||||||||||||||||||||| | | |||| ||||| |
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| T |
6085511 |
gaacaatatttagttgat-gaatcaaccaattattggagtcctaatgaccttattagattcatcaacatacaatcgaactctcttgaacctgaaatcagc |
6085609 |
T |
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| Q |
171 |
ggtaacacaaaaaccaggggacaccacttctattttaacctcagacatctcttcctttatttttctctc |
239 |
Q |
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| T |
6085610 |
agtaacaaatgaatcagggggcaccacttgaatttcaactccagatatatcttcctttatttttctctc |
6085678 |
T |
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