View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10574_high_1 (Length: 442)
Name: NF10574_high_1
Description: NF10574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10574_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 39397523 - 39397940
Alignment:
| Q |
18 |
agttttgcctccttttgtggcaattgcagttcgtccacgacctggtatttgggaatatgtccgtgtgcatgttttcgaacttagtgtggagcaattaagt |
117 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39397523 |
agtttcgcctccttttgtggcaattgcagttcgtccacggcctggtatttgggaatatgtccgtgtgcatgttttcgaacttagtgtggagcaattaagt |
39397622 |
T |
|
| Q |
118 |
gtttctgaatatctccgcttcaaagaagaacttgtagatggaacgtgagaaacccttttcttagtttatgcaatagacaataaactctctgaccatgtgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39397623 |
gtttctgaatatctccgcttcaaagaagaacttgtagatggaacgtgagaaacccttttcttagtttatgcaatagacaataaactctctgaccatgtgg |
39397722 |
T |
|
| Q |
218 |
agtaagagtaacttcatggctgttttcatgactggtttgattttattttacacaacagggataatgatcattatgtattagagcttgattttgagccatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39397723 |
agtaagagtaacttcatggctgttttcatgactggtttgattttattttacacaacagggataatgatcattatgtattagagcttgattttgagccatt |
39397822 |
T |
|
| Q |
318 |
taatgcctcatttcctcgaccaacccgctcatcgtccattggcaatggtgttcagtttctcaatcgtcacctctcttcgattatgtttcggaaaaaagat |
417 |
Q |
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| T |
39397823 |
taatgcctcatttcctcgaccaacccgctcatcgtccattggcaatggtgttcagtttctcaatcgtcacctctcttcgattatgtttcggaaaaaagat |
39397922 |
T |
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| Q |
418 |
tcattggagcctttgctt |
435 |
Q |
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| T |
39397923 |
tcattggagcctttgctt |
39397940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 44518321 - 44518170
Alignment:
| Q |
18 |
agttttgcctccttttgtggcaattgcagttcgtccacgacctggtatttgggaatatgtccgtgtgcatgttttcgaacttagtgtggagcaattaagt |
117 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||| ||| ||||||||||||||||||| |||| || ||||| | || |||||||| || |
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| T |
44518321 |
agttttgcctccttttgtggcaatagcagttcgtccaagacccggtgtttgggaatatgtccgtgttaatgtctttgaactcaacgtcgagcaattgagc |
44518222 |
T |
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| Q |
118 |
gtttctgaatatctccgcttcaaagaagaacttgtagatggaacgtgagaaa |
169 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| || ||||| |
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| T |
44518221 |
atttctgaatatctcagcttcaaagaagaacttgtagatggaaagtaagaaa |
44518170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 298 - 435
Target Start/End: Complemental strand, 44518069 - 44517932
Alignment:
| Q |
298 |
gagcttgattttgagccatttaatgcctcatttcctcgaccaacccgctcatcgtccattggcaatggtgttcagtttctcaatcgtcacctctcttcga |
397 |
Q |
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||||| ||||| |||||||||||||| ||||| ||||| |||||||| ||||| ||||||||||||||||| || |||||||| || |||||||| || | |
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| T |
44518069 |
gagctagatttagagccatttaatgcatcattccctcgtccaacccgttcatcatccattggcaatggtgtgcaatttctcaaccgccacctctcgtcaa |
44517970 |
T |
|
| Q |
398 |
ttatgtttcggaaaaaagattcattggagcctttgctt |
435 |
Q |
| |
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||||||||| || ||||||| ||||| || |||||| |
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| T |
44517969 |
atatgtttcgcaacaaagattgcttggaacccttgctt |
44517932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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