View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10574_high_3 (Length: 238)
Name: NF10574_high_3
Description: NF10574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10574_high_3 |
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| [»] chr3 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 20598034 - 20597811
Alignment:
| Q |
16 |
catcttgcccttttcatctgactgttgtccaacaattcattggcatccttgtttcttctcttttttggtctaccaggttgnnnnnnnn-atgggtggtgg |
114 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
20598034 |
catcttgcccttttcatctgagtgttgtccaacaattcattggcatccttgtttcttctcttttttggtctaccaggttgtttttttttatgggtggtgg |
20597935 |
T |
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| Q |
115 |
ctgaagattagtgtactcagtcctttgccataaactttgaccattagctggataaatggaactactgtaacatgctacatatttgtccttcatgaagata |
214 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20597934 |
ctgaagatcagtgtactcagtcctttgccataaactttgaccattagctggataaatggaactactgtaacatgctacatatttgtccttcatgaagata |
20597835 |
T |
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| Q |
215 |
tctggaacaaagtcaaatatgttc |
238 |
Q |
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|||||||||||||||||||||||| |
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| T |
20597834 |
tctggaacaaagtcaaatatgttc |
20597811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 8699033 - 8698812
Alignment:
| Q |
16 |
catcttgcccttttcatctgactgttgtccaacaattcattggcatccttgtttcttctcttttttggtctaccaggttgnnnnnnnnatgggtggtggc |
115 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8699033 |
catcttgcccttttcatctgagtgttgtccaacaattcattagcatccttgtttcttctcttttttggtctaccaggttgttttttg-atgggtggtggc |
8698935 |
T |
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| Q |
116 |
tgaagattagtgtactcagtcctttgccataaactttgaccattagctggataaatggaactactgtaacatgctacatatttgtccttcatgaagatat |
215 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8698934 |
tgaagatcagtgtactcagtcctttgccataaactttgaccattagccggataaatggaactagagtaacatgctacatatttgtccttcatgaagatat |
8698835 |
T |
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| Q |
216 |
ctggaacaaagtcaaatatgttc |
238 |
Q |
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| T |
8698834 |
ctggaacaaagtcaaatatgttc |
8698812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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