View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10574_low_2 (Length: 352)
Name: NF10574_low_2
Description: NF10574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10574_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 6 - 336
Target Start/End: Complemental strand, 29973917 - 29973587
Alignment:
| Q |
6 |
attttgttatgcaacataatgacatatcatcacccatatccatataattatttttgtgtgcacatgactgcttgggtcatgatgggtgtaatgtcccctt |
105 |
Q |
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| T |
29973917 |
attttgttatgcaacataatgacatatcatcacccatatccatataattatttttgtgtgcacatgactgtttgggtcatgatgggtgtaatgtcccctt |
29973818 |
T |
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| Q |
106 |
cttgaagtgacgtggcacctcttgagtgcctatataaaaccctaacttcccttgcacatacaatcaatttatcttaagcctttttctctattctatattc |
205 |
Q |
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| T |
29973817 |
cttgaagtgacgtggcacctcatgaatgcctatataaaaccctaacttcccttgcacatacaatcaatttatcttaagcctttttctctattctatattc |
29973718 |
T |
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| Q |
206 |
tctttactattgttcatcctttctaattcttcaaagtcataacaaattaaaccattttaattatttgtaccaaaatggcttctcaagtttgtgaaacttt |
305 |
Q |
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| T |
29973717 |
tctttactattgttcatcctttctaattcttcaaagtcataacaaattaaaccattttaattatttgtaccaaaatggcttctcaagtttgtgaaacttt |
29973618 |
T |
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| Q |
306 |
ggcttatgatgtggaaatgaagggtgatctt |
336 |
Q |
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| T |
29973617 |
ggcttatgatgtggaaatgaagggtgatctt |
29973587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 62 - 336
Target Start/End: Complemental strand, 29979457 - 29979172
Alignment:
| Q |
62 |
tgtgcacatgactgcttgggtcatgatgggtgtaatgtccccttcttgaagtgacgtggcacctcttgagtgcctatataaaaccctaacttcccttgca |
161 |
Q |
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| T |
29979457 |
tgtgcacatgactgtttaggccatgatgggtgtattgtccccttcttgaagtgacatggcacctcataagggcctatataaaatcctaacttcccttgct |
29979358 |
T |
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| Q |
162 |
catacaatcaatttatcttaagcctttttct----ctattctatatt-ctctttacta-ttgttcatcctt----tctaattcttcaaagtcat-aacaa |
250 |
Q |
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| T |
29979357 |
catacaatcaattcatcttaagcctttttctctagctattctctattcctctctattatttgttcatcctttttctcctcttcttcaaagtcataaacaa |
29979258 |
T |
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| Q |
251 |
attaaaccattttaattatttgtaccaaaatggcttctcaagtttgtgaaactttggcttatgatgtggaaatgaagggtgatctt |
336 |
Q |
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| T |
29979257 |
agtataccactttaaatatttgtaccaaaatggcttcccaagtttgtgaaactttggcttatgatgtagaaatcaagggtgatctt |
29979172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 52 - 336
Target Start/End: Complemental strand, 29993515 - 29993221
Alignment:
| Q |
52 |
attatttttgtgtgcacatgactgcttgggtcatgatgggtgtaatgtccccttcttgaagtgacgtggcacctcttgagtgcctatataaaaccctaac |
151 |
Q |
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| T |
29993515 |
attatttttgggtgcaaatgactgtttaggtcatgatgggtgtaatgttcccttcttgaagtgatgtgccacctcatgagtgcctatataaaaccctaac |
29993416 |
T |
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| Q |
152 |
ttcccttgcacatacaatcaatttatcttaagccttt------ttctctattctatattctctttactattgttcatc--ctttctaa-------ttctt |
236 |
Q |
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| T |
29993415 |
ttcccttggtcatactatcaattcatcttaagccttttgcttcttttatattctctattctctctattattgctcatcttttttctcatttgatcttctt |
29993316 |
T |
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| Q |
237 |
caaagtcataa-caaattaaaccattttaattatttgtaccaaaatggcttctcaagtttgtgaaactttggcttatgatgtggaaatgaagggtgatct |
335 |
Q |
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|||| |||||| |||||||||||| |||||| || |||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||| |
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| T |
29993315 |
caaattcataagcaaattaaaccaatttaat------tagcaaaatggcttctcaagtttgtgaaacttttccttgtgatgtggaaatcaagggtgatct |
29993222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 62 - 336
Target Start/End: Complemental strand, 29983751 - 29983483
Alignment:
| Q |
62 |
tgtgcacatgactgcttgggtcatgatgggtgtaatgtccccttcttgaagtgacgtggcacctcttgagtgcctatataaaaccctaacttcccttgca |
161 |
Q |
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||||||||||||| ||||| |||| ||| ||||| || ||||||||||||||||||||||| || | | |||||||||||||||| || |||||| |
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| T |
29983751 |
tgtgcacatgactctttgggccatggtggatgtaacgtacccttcttgaagtgacgtggcacttcattaatgcctatataaaacccaaatttccct---- |
29983656 |
T |
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| Q |
162 |
catacaatcaatttatcttaagcctttttctctattctatattctctttactattgttcatcctttcta----attcttcaaagtcataacaaattaa-a |
256 |
Q |
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| T |
29983655 |
catacaatccattcatcttaagcctttttccctattca-------ctctattattgttcatcctttttctcctattcttcaaagtcataaacaactaata |
29983563 |
T |
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| Q |
257 |
ccattttaattatttgtaccaaaatggcttctcaagtttgtgaaactttggcttatgatgtggaaatgaagggtgatctt |
336 |
Q |
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||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| |
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| T |
29983562 |
ccatttttattatttgtactaaaatggcttctcaagtttttgaaactttggcttatgatgtagaaatcaagggtgatctt |
29983483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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