View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10574_low_3 (Length: 335)
Name: NF10574_low_3
Description: NF10574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10574_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 325
Target Start/End: Original strand, 38342745 - 38343051
Alignment:
| Q |
20 |
gtgatgacaggatatttagttattaaatattaatacaatgttttgcttattcagaaggnnnnnnntcaggtatttacatttttctcttcagtatcatctt |
119 |
Q |
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| T |
38342745 |
gtgatgacaggatatttagttattaaatattaatacaatgttttgcttattcagaagaaaaaaaatcaggtatttacatttttctcttcagtatcatctt |
38342844 |
T |
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| Q |
120 |
gcagcaaaa-aattagccaatgtgagactatctgcagaatttgtcaactcttattcatgcattggaatttcagatgttggaacattgtcgcttttgaagc |
218 |
Q |
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| T |
38342845 |
gcagcaaaaaaattagccaatgtgggactatctgcagaatttgtcaactcttattcatgcattggaatttcagatgttggaacattgtcgcttttgaagc |
38342944 |
T |
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| Q |
219 |
ccacgtttaggctgatttctagggagttatcaataacttgcaaacttttgttggtgtcaagaaatgaaccttcccggtttttcggcagttcttccattct |
318 |
Q |
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| T |
38342945 |
ccacgtttaggctgatttctagggagttatcaataacttgcaaacttttgttggtgtcaagaaatgaaccttcctggtttttcggcagttcttccattct |
38343044 |
T |
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| Q |
319 |
acctatg |
325 |
Q |
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||||||| |
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| T |
38343045 |
acctatg |
38343051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 207 - 311
Target Start/End: Original strand, 38335478 - 38335582
Alignment:
| Q |
207 |
cgcttttgaagcccacgtttaggctgatttctagggagttatcaataacttgcaaacttttgttggtgtcaagaaatgaaccttcccggtttttcggcag |
306 |
Q |
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| T |
38335478 |
cgcttttgaagcccgcgtttaggctaacctctaatgaattatcaataacttccaaactcttgttgctgtcaagaaaagaaccttccccatttgtaggcag |
38335577 |
T |
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| Q |
307 |
ttctt |
311 |
Q |
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||||| |
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| T |
38335578 |
ttctt |
38335582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 199
Target Start/End: Original strand, 38334142 - 38334248
Alignment:
| Q |
90 |
tatttacatttttctcttcagtatcatcttgcagcaaaaaattagccaatgtgagactatctgcagaatttgtcaactcttattcatgcattggaatttc |
189 |
Q |
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||||||| | ||||||| ||| ||| |||||| |||||| | |||||||||| ||||||||| |||||||||||| | ||||||| |||||||||| |
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| T |
38334142 |
tatttacttctttctctccagcatcgtcttgctgcaaaaggtcagccaatgtgggactatctggagaatttgtcaagcc---ttcatgccttggaatttc |
38334238 |
T |
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| Q |
190 |
agatgttgga |
199 |
Q |
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| T |
38334239 |
agatgttgga |
38334248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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