View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10574_low_5 (Length: 246)
Name: NF10574_low_5
Description: NF10574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10574_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 20597754 - 20597615
Alignment:
| Q |
1 |
ccatttcctgcagtcacaagaccatctttgcaggttgacatgaaacttgtcaccacttaaagaaacatgcctaacttcataatcaaactcatttgcacgc |
100 |
Q |
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| T |
20597754 |
ccatttcctgcagtcacaagaccatctttgcaggttgacatgaaacttgtcaccacttaaagaaacatgcctaacttcataatcaaactcatttgcacgc |
20597655 |
T |
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| Q |
101 |
ctacaaatacaacatttcataaaattaatatcactactaa |
140 |
Q |
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| T |
20597654 |
ctacaaatataacatttcataaaattaatatcactactaa |
20597615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 150 - 232
Target Start/End: Complemental strand, 20597514 - 20597432
Alignment:
| Q |
150 |
tgttgggtaacacaccatccttcaacattgcagctttctgcctgtttgcttcccatctctccatcaagtacactctgatgtcc |
232 |
Q |
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| T |
20597514 |
tgttgggtaacacaccatcctccaacattgcagctttctgcctgtttgcttcccatctctccatcaggtacactctgatgtcc |
20597432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 8698755 - 8698618
Alignment:
| Q |
1 |
ccatttcctgcagtcacaagaccatctttgcaggttgacatgaaacttgtcaccacttaaagaaacatgcctaacttcataatcaaactcatttgcacgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8698755 |
ccatttcctgcagtcacaagaccatctttgcaggttgacatgaaacttgtgaccagttaaagaaacatgtctaacttcataatcaaactcatttgcacgc |
8698656 |
T |
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| Q |
101 |
ctacaaatacaacatttcataaaattaatatcactact |
138 |
Q |
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| T |
8698655 |
ctacaaatataacatttcataaaattagtatcgctact |
8698618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 8698514 - 8698435
Alignment:
| Q |
150 |
tgttgggtaacacaccatccttcaacattgcagctttctgcctgtttgcttcccatctctccatcaagtacactctgatg |
229 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8698514 |
tgttgggtaacacaccatcctccaacattgcagctttctgcctgtttgcttcccatctctccatcaggtacactctgatg |
8698435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 37101837 - 37101878
Alignment:
| Q |
184 |
tttctgcctgtttgcttcccatctctccatcaagtacactct |
225 |
Q |
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| T |
37101837 |
tttctgcctatttgcttcccatctctccatcaggtacactct |
37101878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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