View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10574_low_6 (Length: 240)
Name: NF10574_low_6
Description: NF10574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10574_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 39791878 - 39792051
Alignment:
| Q |
17 |
agtaacaacaattagtgatgagtgaagtccgattttacattttccttctctaactttctcttgttaatgagtcaaagcacaaaagaaaatatttctcttg |
116 |
Q |
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| T |
39791878 |
agtaacagcaattagtgatgagtgaagtcggattttacattttccttctctaactttctcttgttaatgagtcaaagcacaaaagaaaatatttctcttg |
39791977 |
T |
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| Q |
117 |
ttaatttaacttattctagcaagaaactaaaatctggacatttgagaccaaaagaaaacacaagcttccccttt |
190 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39791978 |
ttaatttaacttattctagcaagaaactcaaatctggaaatttgagaccaaaagaaaacacaagcttccccttt |
39792051 |
T |
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