View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10575_high_3 (Length: 274)
Name: NF10575_high_3
Description: NF10575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10575_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 35902872 - 35902710
Alignment:
| Q |
19 |
tctgccctcacatgttcaacaaagtttaccttttgaaattgcaatcctcacaactcatgatccttaaatttgtcataaaagtgaaagaacaatttgnnnn |
118 |
Q |
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| T |
35902872 |
tctgccctcacatgttcaacaaaatttaccttttgatgttgcaatcctcacaactcatgatccttaaatttgtcataaaagtgaaagaacaatttgaaaa |
35902773 |
T |
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| Q |
119 |
nnntaaaggatcattaggactaaatgaatataaaatgagactatattatgaccaaactgaatt |
181 |
Q |
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| T |
35902772 |
aaataaaggatcattaggactaaatgaataaaaaatgagactatattatgaccaaactgaatt |
35902710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 22 - 177
Target Start/End: Complemental strand, 23892655 - 23892499
Alignment:
| Q |
22 |
gccctcacatgttcaacaaagtttaccttttgaaattgcaatcctcacaactcatgatccttaaatttgtcataaaagtgaaagaacaatttgnnnnnnn |
121 |
Q |
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| T |
23892655 |
gccctctcatgttcaacaatgtttaccttttgaaattgtaatcctcgcaactcatgatccttaaatttgtcatagaagcgaaagaacaatttgaaaaaaa |
23892556 |
T |
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| Q |
122 |
taaaggatcattaggactaaa-tgaatataaaatgagactatattatgaccaaactg |
177 |
Q |
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| T |
23892555 |
taaagggtcattaggactaaattgaatataaaatgagacaatattatgagcaaactg |
23892499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 263
Target Start/End: Complemental strand, 35902671 - 35902638
Alignment:
| Q |
230 |
tatgttgcatttccagattagggactcaattctt |
263 |
Q |
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| T |
35902671 |
tatgttgcatttccagattagggactcaattctt |
35902638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 38852848 - 38852908
Alignment:
| Q |
27 |
cacatgttcaacaaagtttaccttttgaaattgcaatcctcacaactcatgatccttaaat |
87 |
Q |
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| T |
38852848 |
cacatattcaacaatgtttgccttttgaaattgcagtcctcatcactcatgatccttaaat |
38852908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 2212454 - 2212409
Alignment:
| Q |
42 |
gtttaccttttgaaattgcaatcctcacaactcatgatccttaaat |
87 |
Q |
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| T |
2212454 |
gtttgccttttgaaattgcagtcctcatcactcatgatccttaaat |
2212409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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