View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10575_high_4 (Length: 262)
Name: NF10575_high_4
Description: NF10575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10575_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 43377598 - 43377837
Alignment:
| Q |
1 |
caacaggtttggttggacttgaaagaaggtttctcgtgttcaatggcggtaatagaaagaatcacatggaatggttgaataatattcttcaagaagcaac |
100 |
Q |
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| T |
43377598 |
caacaggtttagttggacttgaaagaaggtttctcatgttcaatggaggtattggaaagaaacaaatagaatggttgaataatattcttcaagaagcaac |
43377697 |
T |
|
| Q |
101 |
aaaattgaaacaaaaagttgtggtttgttgtcatttgtctctatatcctggtgcatcatctaaggaagcattgttgtggaattatgatgaagtgataaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43377698 |
aaaattgaaacaaaaagttgtggtttgttgtcatttgtctctatatcctggtgcatcatctaaggaagcattgttgtggaattatgatgaagtgataaat |
43377797 |
T |
|
| Q |
201 |
ttgatacatagatatgattgtgtgaaggtttgtttctctg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
43377798 |
ttgatacatagatatgattgtgtgaaggtttgtttctctg |
43377837 |
T |
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