View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10575_low_1 (Length: 481)
Name: NF10575_low_1
Description: NF10575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10575_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 301 - 470
Target Start/End: Original strand, 3680156 - 3680323
Alignment:
| Q |
301 |
atataaccagtatgtgagatttcttgcatatacattttgctattgggatcagtgctgattgatgagtgtgatgtaactctttccttaagcatatgaaatt |
400 |
Q |
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| T |
3680156 |
atataaccagtatgtga--tttcttgcatatacattttgctattgggatcagtgctgattgatgagtgtgatgtaactctttccttaagcatatgaaatt |
3680253 |
T |
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| Q |
401 |
atgtctcagctcagcttctccctttaatctgaagcaatatgtatcaccattggttgaacttcaacttcat |
470 |
Q |
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| T |
3680254 |
atgtctcagctcagcttctccctttaatctgaagcaatatgtatcaccattggttgaacttcaacttcat |
3680323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 3679782 - 3679978
Alignment:
| Q |
18 |
gaagtccacacacggatttcaacttttgaaaatatccaaagtaacaacataagctata--------------aaatcttttaatttcaatgcatgataac |
103 |
Q |
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| T |
3679782 |
gaagtccacacacggatttcaacttttgaaaatatccaaagtaacaacataagctatatcacgatcacattaaaatcttttaatttcaatgcatgataac |
3679881 |
T |
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| Q |
104 |
atactcagcgacgaattcagctttcgacaggaggtggccagaataagctgaaatattcaacatcatcagacataagcgaaatccaaccttcatccaa |
200 |
Q |
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| T |
3679882 |
atactcagtgacgaattcagctttcgacaggaggtggccagaataagctgaaatattcagcatcatcagacataagcgaaatccgaccttcatccaa |
3679978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 74 - 200
Target Start/End: Original strand, 3695475 - 3695604
Alignment:
| Q |
74 |
taaaatcttttaatttcaatgcatgataacatactcagcgacgaattcagctttcgacagga-----ggtggccagaataagctgaaatattcaacatca |
168 |
Q |
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| T |
3695475 |
taaaatcttttaat--caatgcatgataacatactcaatgacgatttcagctttcgacacaatgcaaggtggccagaacaagttggaatattcaggatca |
3695572 |
T |
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| Q |
169 |
tcagacataagcgaaatccaaccttcatccaa |
200 |
Q |
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| T |
3695573 |
ttagacataagcgaaatcctaccttcatccaa |
3695604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 404
Target Start/End: Original strand, 3687942 - 3687996
Alignment:
| Q |
348 |
atcagtgctgattgatgagtgtgatgtaactctttccttaagcatatgaaattatgt |
404 |
Q |
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| T |
3687942 |
atcagtgatgattgatgaatg--atgtaactctgtccttaagcatatgaaattatgt |
3687996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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