View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10575_low_3 (Length: 389)
Name: NF10575_low_3
Description: NF10575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10575_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 37926045 - 37925690
Alignment:
| Q |
18 |
aggttggtgctgaacttaacgctaatccaactgcgttaggttccctcactcttttccgatcccttgttcaatcattctgttaccctctggctgcttacct |
117 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37926045 |
aggttggtgctgaacttaacgctgatccaactgcgttaggttccctcactcttttccgatcccttgttcaatcattctgttaccctctggctgcttacct |
37925946 |
T |
|
| Q |
118 |
ggccacgcgacacaatcgtgcacatgttattgctctaggtgcttttctttgggctgctgccactttcctcgtcgccatctcctccaccttcttacaggtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37925945 |
ggccacgcgacacaatcgtgcacatgttattgctctaggtgcttttctttgggctgctgccactttcctcgtcgccatctcctccaccttcttacaggtt |
37925846 |
T |
|
| Q |
218 |
cttatttacctctccttttgacttgtttggccacatggaattttggttcaagtcaacttttattttgcctagacttggtagttactaaatggaattttgg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37925845 |
cttatttacctctccttttgacttgtttggccacatggaactttggttcaagtcaacttttattttgcctagacttggtagttactaaatggaattttgg |
37925746 |
T |
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| Q |
318 |
accccctgtcccagctgtccatgggaacagttagttgttagtgtagaagttgtggg |
373 |
Q |
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| T |
37925745 |
acccctagtcccagctgtccatgggaacagttagttgttagtgtagaagttatggg |
37925690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 21 - 221
Target Start/End: Complemental strand, 37922459 - 37922259
Alignment:
| Q |
21 |
ttggtgctgaacttaacgctaatccaactgcgttaggttccctcactcttttccgatcccttgttcaatcattctgttaccctctggctgcttacctggc |
120 |
Q |
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| T |
37922459 |
ttggtgatgaactcaacgctgacccaactgcgttaggttctctcactcttttccgatccctggttcaagcattctgttaccctcttgctgcttaccttgc |
37922360 |
T |
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| Q |
121 |
cacgcgacacaatcgtgcacatgttattgctctaggtgcttttctttgggctgctgccactttcctcgtcgccatctcctccaccttcttacaggttctt |
220 |
Q |
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||| |||||||||||||||||||| |||||||| |||||||||||||||||||| || || |||||||| || |||||||||||||||| ||||||||| |
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| T |
37922359 |
cacacgacacaatcgtgcacatgtcattgctcttggtgcttttctttgggctgccgctacattcctcgttgctgtctcctccaccttcttgcaggttctt |
37922260 |
T |
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| Q |
221 |
a |
221 |
Q |
| |
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| |
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| T |
37922259 |
a |
37922259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 37937731 - 37937538
Alignment:
| Q |
23 |
ggtgctgaacttaacgctaatccaactgcgttaggttccctcactcttttccgatcccttgttcaatcattctgttaccctctggctgcttacctggcca |
122 |
Q |
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||||||| ||||||||| | || || || |||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||| |||| |
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| T |
37937731 |
ggtgctgctcttaacgctgaccccaccgccttaggttctctcactcttttccgatcacttgttcaatcattctgttaccctcttgctacttacctcgcca |
37937632 |
T |
|
| Q |
123 |
cgcgacacaatcgtgcacatgttattgctctaggtgcttttctttgggctgctgccactttcctcgtcgccatctcctccaccttcttacaggt |
216 |
Q |
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| || |||||||| |||||||||||||||| |||||||||||||||||||| || || |||||||| |||||||| || ||||| |||||||| |
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| T |
37937631 |
cccgttacaatcgttcacatgttattgctcttggtgcttttctttgggctgccgctacgttcctcgttgccatctcatctacctttttacaggt |
37937538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 56 - 216
Target Start/End: Original strand, 26285169 - 26285329
Alignment:
| Q |
56 |
ggttccctcactcttttccgatcccttgttcaatcattctgttaccctctggctgcttacctggccacgcgacacaatcgtgcacatgttattgctctag |
155 |
Q |
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||||| || ||||| || |||||| |||||||||| | |||||||| | || || || || |||||||| || |||||||| |||||||||||||| | |
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| T |
26285169 |
ggttcgcttactctctttcgatccattgttcaatcttcttgttacccaattgccgcgtatctcgccacgcgtcataatcgtgctcatgttattgctcttg |
26285268 |
T |
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| Q |
156 |
gtgcttttctttgggctgctgccactttcctcgtcgccatctcctccaccttcttacaggt |
216 |
Q |
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|||||||||||||||||||||| ||||| || || ||| |||||||||| ||||| ||||| |
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| T |
26285269 |
gtgcttttctttgggctgctgctacttttcttgttgccttctcctccactttctttcaggt |
26285329 |
T |
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