View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10575_low_5 (Length: 292)
Name: NF10575_low_5
Description: NF10575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10575_low_5 |
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| [»] scaffold0187 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 5 - 282
Target Start/End: Original strand, 45759115 - 45759392
Alignment:
| Q |
5 |
acaaaattgacattgttcatatcagacactaatagacattattaattgtggtcaacacgacatatgaatttatgatcaatacctataaagacaataaatt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45759115 |
acaaaattgacattgttcatatcagacactaatagacattattaattgtggtcaacacgacatatgaatttatgatcaatacctataaagacaataaatt |
45759214 |
T |
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| Q |
105 |
aaaggtacagtaatgatagtagtaattaaaatttcataatcctgaaaaattctaatgctatgcttaagcttgaagttgatgatgagtttctgagtccgaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45759215 |
aaaggtacagtaatgatagtagtaattaaaatttcataatcctgaaaaattctaatgctatgcttaagcttgaagttgatgatgagtttctgagtccgaa |
45759314 |
T |
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| Q |
205 |
atgtgcttcttgtatagagcaataaaagctgtagctctcatgtcaataacaggatcagctaccccccatgtacctttg |
282 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45759315 |
atgtgcttcttgtatcgagcaataaaagctgtagctctcatgtcaataacaggatcagctaccccccatgtacctttg |
45759392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 6633 - 6694
Alignment:
| Q |
211 |
ttcttgtatagagcaataaaagctgtagctctcatgtcaataacaggatcagctacccccca |
272 |
Q |
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||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6633 |
ttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacacccca |
6694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 16961 - 17022
Alignment:
| Q |
211 |
ttcttgtatagagcaataaaagctgtagctctcatgtcaataacaggatcagctacccccca |
272 |
Q |
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||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16961 |
ttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacacccca |
17022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 27289 - 27350
Alignment:
| Q |
211 |
ttcttgtatagagcaataaaagctgtagctctcatgtcaataacaggatcagctacccccca |
272 |
Q |
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||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27289 |
ttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacacccca |
27350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 37855615 - 37855554
Alignment:
| Q |
211 |
ttcttgtatagagcaataaaagctgtagctctcatgtcaataacaggatcagctacccccca |
272 |
Q |
| |
|
||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37855615 |
ttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacacccca |
37855554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 37867803 - 37867742
Alignment:
| Q |
211 |
ttcttgtatagagcaataaaagctgtagctctcatgtcaataacaggatcagctacccccca |
272 |
Q |
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||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37867803 |
ttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacacccca |
37867742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 37881843 - 37881782
Alignment:
| Q |
211 |
ttcttgtatagagcaataaaagctgtagctctcatgtcaataacaggatcagctacccccca |
272 |
Q |
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||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37881843 |
ttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacacccca |
37881782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 37911788 - 37911727
Alignment:
| Q |
211 |
ttcttgtatagagcaataaaagctgtagctctcatgtcaataacaggatcagctacccccca |
272 |
Q |
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||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37911788 |
ttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacacccca |
37911727 |
T |
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