View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10575_low_8 (Length: 246)
Name: NF10575_low_8
Description: NF10575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10575_low_8 |
 | |
|
| [»] scaffold0627 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 8529036 - 8529277
Alignment:
| Q |
1 |
attgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529036 |
attgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatca |
8529135 |
T |
|
| Q |
101 |
caaatgtatagaaatccctttaattctcccatgctaataggcctacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaatgactgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8529136 |
caaatgtatagaaatccctttaattctcccatgctaataggcctacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaacgactgca |
8529235 |
T |
|
| Q |
201 |
acctctcattttcaaagcagaaaaccaatattgacctttgct |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529236 |
acctctcattttcaaagcagaaaaccaatattgacctttgct |
8529277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 8535594 - 8535840
Alignment:
| Q |
1 |
attgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatca |
100 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| |
|
|
| T |
8535594 |
attgaatgaagtatcaatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacatcagataaaaaggtcgaatca |
8535693 |
T |
|
| Q |
101 |
caaatgtatagaaatccctttaattctcccatgctaataggcctacaacaaaaaa------cattatgatttccaaacacatgtggaggagaaggaaatg |
194 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| | ||| || || || ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8535694 |
caaatgtaaagaaatccctttaattctcccatgctaatatgtctattactaagaaatccattattatgatttccaaacatctgtggaggagaaggaaatg |
8535793 |
T |
|
| Q |
195 |
actgcaacctctcattttcaaagcagaaaaccaatattgacctttgc |
241 |
Q |
| |
|
||| || | ||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
8535794 |
acttcagcgtctcactttcaaagcagaaaatcaatattgacctttgc |
8535840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 1600311 - 1600066
Alignment:
| Q |
1 |
attgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatca |
100 |
Q |
| |
|
|||||| ||||||||| ||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| ||||| ||||| |||||| | ||| |
|
|
| T |
1600311 |
attgaatgaagtatcgtacttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaaaaggtag--tca |
1600214 |
T |
|
| Q |
101 |
caaatgtatagaaatccctttaattctcccatgctaataggcc---tacaacaa---aaaacattatgatttccaaacacatgtggaggagaaggaaatg |
194 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| | | | ||| |||| | |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1600213 |
caaatgtaaagaaatccctttaattctcccatgctaacatggctgttaccacaagttccattattatgatttccaaactcatgtggaggagaaggaaatg |
1600114 |
T |
|
| Q |
195 |
actgcaacctctcattttcaaagcagaaaaccaatattgacctttgct |
242 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||| |||||| |
|
|
| T |
1600113 |
actgcaacctctcactttcaaaacagaaaaccaatattgacatttgct |
1600066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 9074736 - 9074492
Alignment:
| Q |
1 |
attgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatca |
100 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||| |||| |||||||||||||||||||||| |||||||| ||||| ||| ||| ||| |
|
|
| T |
9074736 |
attgaacgaagtatcaatgttgtaaactttagtccatgattcttcaataccatattcattcataacccacactgaaacatcagataaaaatgtccagtca |
9074637 |
T |
|
| Q |
101 |
caaatgtatagaaatccctttaattctcccatgcta-ataggcctacaacaa--aaaacattatgatttccaaacacatgtggaggagaaggaaatgact |
197 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| || | | |||||| | |||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
9074636 |
caaatgtaaagaaatccctttaattctcccatgatatgtctgttatcaacaattccactattatggtttccaaacacatgcggaggagaaggaaatgact |
9074537 |
T |
|
| Q |
198 |
gcaacctctcattttcaaagcagaaaaccaatattgacctttgct |
242 |
Q |
| |
|
||||||||||| ||||||| ||||||| ||||||||||||||||| |
|
|
| T |
9074536 |
gcaacctctcactttcaaaacagaaaaacaatattgacctttgct |
9074492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 242
Target Start/End: Original strand, 8641475 - 8641720
Alignment:
| Q |
12 |
tatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcg------gatcacaaat |
105 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||| | | | |||||||| |||||||||| |
|
|
| T |
8641475 |
tatcaatgttgtaagccttagtccatgattctccaatgccatattcattcataacccacactgtgacatcaaagaaaaaggtcgagtcacgatcacaaat |
8641574 |
T |
|
| Q |
106 |
gtatagaaatccctttaattctcccatgctaataggcctacaacaaaaaac---------attatgatttccaaacacatgtggaggagaaggaaatgac |
196 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||| |||| || | || ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8641575 |
gtaaggaaatccctttaactctcccatgctaataagcctgttaccatgaattccattattattatgatttccaaacacatgtggaggagaaggaaataac |
8641674 |
T |
|
| Q |
197 |
tgcaacctctcattttcaaagcagaaaaccaatattgacctttgct |
242 |
Q |
| |
|
| ||| |||||| |||| || |||||| |||||||||||||||| |
|
|
| T |
8641675 |
ttcaatctctcactttccaaacagaaacataatattgacctttgct |
8641720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 2856897 - 2856682
Alignment:
| Q |
7 |
cgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatg |
106 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | | | | || ||||||| |
|
|
| T |
2856897 |
cgaagtatcaatgttgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacattctcgagagacgatctatgacaaatg |
2856798 |
T |
|
| Q |
107 |
tatagaaatccctttaattctcccatgctaataggc---ctacaacaaaaaacatt---atgatttccaaacacatgtggaggagaaggaaatgactgca |
200 |
Q |
| |
|
|| ||||||||||| |||||||||| ||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2856797 |
taaagaaatcccttcaattctcccaatctaataggcatgctatggggaaatccattatcatgatttccaaacacatgtggaggagaaggaaacgactgca |
2856698 |
T |
|
| Q |
201 |
acctctcattttcaaa |
216 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
2856697 |
acctctcactttcaaa |
2856682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 2874507 - 2874292
Alignment:
| Q |
7 |
cgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatg |
106 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | | | | || ||||||| |
|
|
| T |
2874507 |
cgaagtatcaatgttgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacattctcgagagacgatctatgacaaatg |
2874408 |
T |
|
| Q |
107 |
tatagaaatccctttaattctcccatgctaataggc---ctacaacaaaaaacatt---atgatttccaaacacatgtggaggagaaggaaatgactgca |
200 |
Q |
| |
|
|| ||||||||||| |||||||||| ||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2874407 |
taaagaaatcccttcaattctcccaatctaataggcatgctatggggaaatccattatcatgatttccaaacacatgtggaggagaaggaaacgactgca |
2874308 |
T |
|
| Q |
201 |
acctctcattttcaaa |
216 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
2874307 |
acctctcactttcaaa |
2874292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 2845070 - 2844855
Alignment:
| Q |
7 |
cgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatg |
106 |
Q |
| |
|
||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | | | | || ||||||| |
|
|
| T |
2845070 |
cgaagtatcaatgctgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacattctcaagagacgatatatgacaaatg |
2844971 |
T |
|
| Q |
107 |
tatagaaatccctttaattctcccatgctaataggc---ctacaacaaaaaacatt---atgatttccaaacacatgtggaggagaaggaaatgactgca |
200 |
Q |
| |
|
|| ||||||||||| |||||||||| ||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2844970 |
taaagaaatcccttcaattctcccaatctaataggcatgctaaggggaaatccattatcatgatttccaaacacatgtggaggagaaggaaacgactgca |
2844871 |
T |
|
| Q |
201 |
acctctcattttcaaa |
216 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
2844870 |
acctctcactttcaaa |
2844855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 8636968 - 8637039
Alignment:
| Q |
9 |
aagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacat |
80 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8636968 |
aagtatcgatgttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacat |
8637039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 2905003 - 2904938
Alignment:
| Q |
9 |
aagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattg |
74 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2905003 |
aagtatcaatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattg |
2904938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 8644313 - 8644546
Alignment:
| Q |
9 |
aagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacatta-gatataaaggtcggatcacaaatgt |
107 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||| | || | || | | ||| ||||||| |
|
|
| T |
8644313 |
aagtatcaatgttgtaaaccttagtccatgattctccaatgtcatattcattcataacccacattgcaacatcacgaaaagaatat-gtatcgcaaatgt |
8644411 |
T |
|
| Q |
108 |
atagaaatccctttaattctcccatgctaataggc---ctacaacaaaaaacatta---tgatttccaaacacatgtggaggagaaggaaatgactgcaa |
201 |
Q |
| |
|
| || |||||| ||||||||||||||| |||| || ||| || ||| ||||| |||||| |||||| |||||||||||||||||| ||||| |
|
|
| T |
8644412 |
aaagtaatccccttaattctcccatgcgaatacgctcgttacgacgaaatccattattttgattttgaaacac---tggaggagaaggaaatgattgcaa |
8644508 |
T |
|
| Q |
202 |
cctctcattttcaaagcagaaaaccaatattgaccttt |
239 |
Q |
| |
|
||||||| ||||||| |||||| |||||| ||||||| |
|
|
| T |
8644509 |
cctctcactttcaaaacagaaacacaatatagaccttt |
8644546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 8677918 - 8677986
Alignment:
| Q |
12 |
tatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacat |
80 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
8677918 |
tatcaatgttgtaaaccttagtccatgattctccaatgccatattcattcatatcccacattgcaacat |
8677986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 8548108 - 8547984
Alignment:
| Q |
9 |
aagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgta |
108 |
Q |
| |
|
||||||| |||| |||||||||||||||||| |||||| ||||| |||||||||||||||| ||||| ||| | | || || ||||||||||| |
|
|
| T |
8548108 |
aagtatcaatgtggtaaatcttagtccatgactctcca------tattcgttcataacccacattgtaacataagagagatagttccagtcacaaatgta |
8548015 |
T |
|
| Q |
109 |
tagaaatccctttaattctcccatgctaata |
139 |
Q |
| |
|
||| |||||||||||||||||| ||||||| |
|
|
| T |
8548014 |
aagacatccctttaattctcccaagctaata |
8547984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 2904848 - 2904774
Alignment:
| Q |
166 |
tccaaacacatgtggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttg |
240 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||| ||||||| ||||||| | |||| |||||||||| |||| |
|
|
| T |
2904848 |
tccaaacatatgtggaggagaaggaaatgattgcatcctctcactttcaaaactgaaacacaatattgacttttg |
2904774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 8637140 - 8637201
Alignment:
| Q |
178 |
tggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgaccttt |
239 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| || |||||| |||||| ||||||| |
|
|
| T |
8637140 |
tggaggagaaggaaatgattgcaacctctcattttctaaacagaaacacaatatagaccttt |
8637201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 9443197 - 9443438
Alignment:
| Q |
1 |
attgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443197 |
attgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatca |
9443296 |
T |
|
| Q |
101 |
caaatgtatagaaatccctttaattctcccatgctaataggcctacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaatgactgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443297 |
caaatgtatagaaatccctttaattctcccatgctaataggcctactacaataaacattatgatttccaaacacatgtggaggagaaggaaatgactgca |
9443396 |
T |
|
| Q |
201 |
acctctcattttcaaagcagaaaaccaatattgacctttgct |
242 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9443397 |
acctctcactttcaaagcagaaaaccaatattgacctttgct |
9443438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 48361865 - 48361618
Alignment:
| Q |
1 |
attgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatca |
100 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||||| |||||||| |||| ||||||||||||||||||||||||||||||| |||| |||||||| ||| |
|
|
| T |
48361865 |
attgaacgcagtattgatgttgtaaaccttagtctatgattcttcaataccatattcattcataacccacattgaaacatcagatgcaaaggtcgagtca |
48361766 |
T |
|
| Q |
101 |
caaatgtatagaaatccctttaattctcccatgctaataggcctacaacaaaaaa------cattatgatttccaaacacatgtggaggagaaggaaatg |
194 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||| || || || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48361765 |
caaatgtaaagaaatccctttaattctcccatgctaatatgcctgttaccaagaattccattattatgatttccaaacacatgtggaggagaaggaaatg |
48361666 |
T |
|
| Q |
195 |
actgcaacctctcattttcaaagcagaaaaccaatattgacctttgct |
242 |
Q |
| |
|
|||||| ||||||| ||||||| ||||||| ||||||||||||||||| |
|
|
| T |
48361665 |
actgcaccctctcactttcaaaacagaaaaacaatattgacctttgct |
48361618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 35779921 - 35780119
Alignment:
| Q |
1 |
attgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatca |
100 |
Q |
| |
|
||||| |||||| || |||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||| ||||| | | ||| || ||| |
|
|
| T |
35779921 |
attgaccgaagtctcaatgttgtaaaccttagtccacgattcttcaatgccatgctcattcataacccacattgtaacatcaacaaaaaaattcaagtca |
35780020 |
T |
|
| Q |
101 |
caaatgtatagaaatccctttaattctcccatgctaataggcctacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaatgactgca |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||| | || |||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35780021 |
caaatgtaaagaaatccctttaattctcccatgctaatacgcct---------attatcatgaattccaaacacatgtggaggagaaggaaatggctgca |
35780111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 26324283 - 26324198
Alignment:
| Q |
1 |
attgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagata |
86 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26324283 |
attgaacgaagcatcgatgttgtaaatcttagtccatgattctccagtgccatattcattcataacccacattgaaacatcagata |
26324198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 97 - 216
Target Start/End: Original strand, 5130959 - 5131081
Alignment:
| Q |
97 |
atcacaaatgtatagaaatccctttaattctcccatgctaataggcc---tacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaat |
193 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||| ||| || | | | ||||| ||||||||||| ||||||| |||||||||||||| ||| |
|
|
| T |
5130959 |
atcagaaatgtaaagaaatccctttaattctcccatgccgatatgctcggtgccataaaaatcattatgattttcaaacacgtgtggaggagaagggaat |
5131058 |
T |
|
| Q |
194 |
gactgcaacctctcattttcaaa |
216 |
Q |
| |
|
|| ||||| |||||| ||||||| |
|
|
| T |
5131059 |
gattgcaatctctcactttcaaa |
5131081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 16716447 - 16716577
Alignment:
| Q |
9 |
aagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgta |
108 |
Q |
| |
|
||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| | | ||| ||||||| |
|
|
| T |
16716447 |
aagtatcaatgtggtaaaccttagtccatgattctccaatgccatattcattcataacccacattgtaacatattcgaagaagtttgagtcagaaatgta |
16716546 |
T |
|
| Q |
109 |
tagaaatccctttaattctcccatgctaata |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
16716547 |
tagaaatccctttaattctcccatgctaata |
16716577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 4756 - 4878
Alignment:
| Q |
17 |
atgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatc |
116 |
Q |
| |
|
|||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| || || | | ||||||||||| ||||||| |
|
|
| T |
4756 |
atgtggtaaaccttagtccatgattcaccaatgccatattcattcataacccacattgtaacatattttaaggagtttgagtcacaaatgtaaagaaatc |
4855 |
T |
|
| Q |
117 |
cctttaattctcccatgctaata |
139 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
4856 |
cctttaattctcccatgctaata |
4878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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