View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10576_high_1 (Length: 466)

Name: NF10576_high_1
Description: NF10576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10576_high_1
NF10576_high_1
[»] chr1 (3 HSPs)
chr1 (1-466)||(32138599-32139064)
chr1 (2-438)||(32148017-32148453)
chr1 (20-376)||(32126906-32127259)


Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 32139064 - 32138599
Alignment:
Q  1 ccctgcacgctgccgttcagcccaatgctccctcgcaaaatccgacggctgtggtgattgtttctcatcaccaaaacctggctgcaacaacaacacctgt 100  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32139064 ccctgcacgctgccgttcagcccaatgctcccttgcaaattccgacggctgtggtgattgtttctcatcaccaaaacctggctgcaacaacaacacttgt 32138965  T
Q  101 ggtgtcaccccggacaatagcattacccacaccgccaccagcggtgaacttgctgaagatgttttatcaatccaatcctctaatggcttcaacccaggac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32138964 ggtgtcaccccggacaatagcattacccacaccgccaccagcggtgaacttgctgaagatgttttatcaatccaatcctctaatggcttcaacccaggac 32138865  T
Q  201 aaaatgtcgtggtttcacgcttcctattctcatgtgcaccaactttcttactaaaaggacttgcaagtggtgcttctggtatggctggtcttggaagaac 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32138864 aaaatgtcgtggtttcacgcttcctattctcatgtgcaccaactttcttactaaaaggacttgcaactggtgcttctggtatggctggtcttggaagaac 32138765  T
Q  301 caaaatagctcttccatctcaactagcttcggcttttagcttcgctagaaaattcgctatttgtctttcctcttcaaagggagttgttttattcggggat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32138764 caaaatagctcttccatctcaactagcttcggcttttagcttcgctagaaaattcgctatttgtctttcctcttcaaagggagttgttttattcggggat 32138665  T
Q  401 ggaccttacggttttcttcccaacgttgtttttgattcagattcgcttacatatacaccgcctttg 466  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||    
T  32138664 ggaccttacggttttcttcccaacgttgtttttgactcggattcgcttacatatacaccgcttttg 32138599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 2 - 438
Target Start/End: Complemental strand, 32148453 - 32148017
Alignment:
Q  2 cctgcacgctgccgttcagcccaatgctccctcgcaaaatccgacggctgtggtgattgtttctcatcaccaaaacctggctgcaacaacaacacctgtg 101  Q
    |||||||| || || || |||||||||||||| || |||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||      
T  32148453 cctgcacggtgtcgctctgcccaatgctcccttgccaaattcgacgactgtggtgtttgtttctcatcaccaaaacctggctgcaacaacaacacctgca 32148354  T
Q  102 gtgtcaccccggacaatagcattacccacaccgccaccagcggtgaacttgctgaagatgttttatcaatccaatcctctaatggcttcaacccaggaca 201  Q
    ||||  |||| |  |||||| ||||||| | |||||  ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32148353 gtgttgccccagggaatagcgttacccagagcgccatgagcggtgaactggctgaagatattttatcaatccaatcctctaatggcttcaacccaggaca 32148254  T
Q  202 aaatgtcgtggtttcacgcttcctattctcatgtgcaccaactttcttactaaaaggacttgcaagtggtgcttctggtatggctggtcttggaagaacc 301  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  32148253 aaatgtcatggtttcacgcttcctattctcatgtgcacgaactttcttactagaaggacttgcaagtggtgcttctggtatggctggtcttggaagaaac 32148154  T
Q  302 aaaatagctcttccatctcaactagcttcggcttttagcttcgctagaaaattcgctatttgtctttcctcttcaaagggagttgttttattcggggatg 401  Q
    ||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32148153 aaattagctcttccatctcaattagcttcggcttttagcttcgctaaaaaattcgctatttgtctttcctcttcaaagggagttgttttattcggggatg 32148054  T
Q  402 gaccttacggttttcttcccaacgttgtttttgattc 438  Q
    |||||||||||||||| |||||||| |||||||||||    
T  32148053 gaccttacggttttctccccaacgtcgtttttgattc 32148017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 20 - 376
Target Start/End: Complemental strand, 32127259 - 32126906
Alignment:
Q  20 gcccaatgctccctcgcaaaatccgacggctgtggtgattgtttctcatcaccaaaacctggctgcaacaacaacacctgtggtgtcaccccggacaata 119  Q
    ||||||||||||||||| ||||| ||  ||||||||||||||||||||||||||||||| |||||||||||||   | |||||  |||  |||||||| |    
T  32127259 gcccaatgctccctcgccaaatctgatagctgtggtgattgtttctcatcaccaaaacccggctgcaacaaca---cttgtggcctcattccggacaaca 32127163  T
Q  120 gcattacccacaccgccaccagcggtgaacttgctgaagatgttttatcaatccaatcctctaatggcttcaacccaggacaaaatgtcgtggtttcacg 219  Q
     ||| || |||| ||| ||  | || || || |||||||| |||||||| ||||||||  |||  || |||||| |||||||||||||||| ||||||||    
T  32127162 ccatcacacacagcgctactcgtggcgatctagctgaagacgttttatccatccaatcaactagcggtttcaacacaggacaaaatgtcgttgtttcacg 32127063  T
Q  220 cttcctattctcatgtgcaccaactttcttactaaaaggacttgcaagtggtgcttctggtatggctggtcttggaagaaccaaaatagctcttccatct 319  Q
    ||| ||||| ||||| |||||||| |  ||| ||  |||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  32127062 ctttctattttcatgcgcaccaacatcattattacgaggacttgcaggtggtgcttctggcatggctggtcttggaagaaccaaaatcgctcttccatct 32126963  T
Q  320 caactagcttcggcttttagcttcgctagaaaattcgctatttgtctttcctcttca 376  Q
    ||||||||||| |||||||  |||   |||||||| ||| ||||| |||| ||||||    
T  32126962 caactagcttctgcttttattttcaaaagaaaatttgctttttgtttttcttcttca 32126906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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