View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10576_high_8 (Length: 241)

Name: NF10576_high_8
Description: NF10576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10576_high_8
NF10576_high_8
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-225)||(73484-73708)
[»] chr6 (6 HSPs)
chr6 (160-202)||(29757870-29757912)
chr6 (166-202)||(29721844-29721880)
chr6 (167-217)||(29673039-29673089)
chr6 (165-202)||(28489671-28489708)
chr6 (1-62)||(29757567-29757628)
chr6 (165-202)||(29802081-29802118)
[»] scaffold0012 (3 HSPs)
scaffold0012 (165-202)||(211027-211064)
scaffold0012 (166-227)||(237714-237775)
scaffold0012 (1-62)||(210706-210767)
[»] chr8 (1 HSPs)
chr8 (165-202)||(12590923-12590960)
[»] chr3 (1 HSPs)
chr3 (160-201)||(615951-615992)


Alignment Details
Target: scaffold0007 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 73708 - 73484
Alignment:
Q  1 tttatctagaaaaccaaccgatttatccatcacaattagtttcatacaattttgaattgaaaatagatttatgagaaagcccctccacttccactcatat 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  73708 tttacctagaaaaccaaccgatttatccatcacaattagtttcatacaattttgaattgaaaatagatttatgagaaagcccctccacttccactcatat 73609  T
Q  101 tgatttgctggagagcgaaagcccttccactcaaatcgatttgatgatagaaaaccgttattgtgacattccagcactcttagactatttggaagatgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  73608 tgatttgctggagagcgaaagcccttccactcaaatcgatttgatgaaagaaaaccgtaattgtgacattccaacactcttagactatttggaagatgtt 73509  T
Q  201 tgtggatttcagaaaaatcgacatg 225  Q
    | |||||||||||||||||||||||    
T  73508 tctggatttcagaaaaatcgacatg 73484  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 29757870 - 29757912
Alignment:
Q  160 attgtgacattccagcactcttagactatttggaagatgtttg 202  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  29757870 attgtgacattccagcactctgagactatttggaagatgtttg 29757912  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 29721844 - 29721880
Alignment:
Q  166 acattccagcactcttagactatttggaagatgtttg 202  Q
    |||||||||||||||||||||||||||||||||||||    
T  29721844 acattccagcactcttagactatttggaagatgtttg 29721880  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 29673039 - 29673089
Alignment:
Q  167 cattccagcactcttagactatttggaagatgtttgtggatttcagaaaaa 217  Q
    ||||||| |||||||||||||||||||||||||||| |  |||||||||||    
T  29673039 cattccaacactcttagactatttggaagatgtttgggattttcagaaaaa 29673089  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 28489671 - 28489708
Alignment:
Q  165 gacattccagcactcttagactatttggaagatgtttg 202  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  28489671 gacattccaacactcttagactatttggaagatgtttg 28489708  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 29757567 - 29757628
Alignment:
Q  1 tttatctagaaaaccaaccgatttatccatcacaattagtttcatacaattttgaattgaaa 62  Q
    |||| |||||||||||||||||||||| ||  |||||||||||  |||||||| ||||||||    
T  29757567 tttacctagaaaaccaaccgatttatcaattgcaattagtttccaacaatttttaattgaaa 29757628  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 29802081 - 29802118
Alignment:
Q  165 gacattccagcactcttagactatttggaagatgtttg 202  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  29802081 gacattccaacactcttagactatttggaagatgtttg 29802118  T

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Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 211027 - 211064
Alignment:
Q  165 gacattccagcactcttagactatttggaagatgtttg 202  Q
    ||||||||||||||||||||||||||||||||||||||    
T  211027 gacattccagcactcttagactatttggaagatgtttg 211064  T

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Target: scaffold0012; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 237714 - 237775
Alignment:
Q  166 acattccagcactcttagactatttggaagatgtttgtggatttcagaaaaatcgacatgat 227  Q
    ||||||||||||||||||||||||||||||| ||||| |  ||| ||||||||| |||||||    
T  237714 acattccagcactcttagactatttggaagacgtttgggagttttagaaaaatccacatgat 237775  T

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Target: scaffold0012; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 210706 - 210767
Alignment:
Q  1 tttatctagaaaaccaaccgatttatccatcacaattagtttcatacaattttgaattgaaa 62  Q
    |||| |||||||||||||||||||||| ||  ||||||||| |  |||||||| ||||||||    
T  210706 tttacctagaaaaccaaccgatttatcaattgcaattagttcccaacaatttttaattgaaa 210767  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 12590960 - 12590923
Alignment:
Q  165 gacattccagcactcttagactatttggaagatgtttg 202  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  12590960 gacattccaacactcttagactatttggaagatgtttg 12590923  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 615992 - 615951
Alignment:
Q  160 attgtgacattccagcactcttagactatttggaagatgttt 201  Q
    |||| ||||||||| |||||||||||||||||||||||||||    
T  615992 attgcgacattccaacactcttagactatttggaagatgttt 615951  T

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