View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10576_low_12 (Length: 240)

Name: NF10576_low_12
Description: NF10576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10576_low_12
NF10576_low_12
[»] scaffold0007 (2 HSPs)
scaffold0007 (1-240)||(73727-73966)
scaffold0007 (10-79)||(74029-74098)
[»] chr3 (1 HSPs)
chr3 (4-229)||(616398-616623)
[»] chr6 (9 HSPs)
chr6 (4-220)||(28489037-28489253)
chr6 (4-220)||(29801447-29801663)
chr6 (7-190)||(28475620-28475803)
chr6 (1-190)||(29691311-29691500)
chr6 (4-96)||(29721434-29721526)
chr6 (8-122)||(29672621-29672735)
chr6 (10-79)||(28488902-28488971)
chr6 (10-79)||(29801312-29801381)
chr6 (10-90)||(29705167-29705248)
[»] scaffold0012 (2 HSPs)
scaffold0012 (37-143)||(237197-237303)
scaffold0012 (6-69)||(210594-210657)
[»] chr1 (2 HSPs)
chr1 (10-77)||(5919997-5920064)
chr1 (10-79)||(5919292-5919361)


Alignment Details
Target: scaffold0007 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 73966 - 73727
Alignment:
Q  1 cataggtgaaaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgagagatggaataattctgattttggtgcagttt 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  73966 cataggtgaaaaactctcaagattactacaatatgaaagttcaagttcttctagagaaggtaacatgagatatggaataattctgattttggtgcagttt 73867  T
Q  101 gtaaccctaaagattttaagctcttcgacaaatccattcaccatgagaggaaagctgtctagttgataacaatgtgaaagatcgagttcttttagtgaag 200  Q
    |||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  73866 gtaaccctcaagattttaagctctccaacaaatccattcaccatgagaggaaagctgtctagttgataacaatgtgaaagattgagttcttctagtgaag 73767  T
Q  201 ccaaactaagaggtggaacagtcttgattgtgcatcttat 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  73766 ccaaactaagaggtggaacagtcttgattgtgcatcttat 73727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 74098 - 74029
Alignment:
Q  10 aaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgagagatggaata 79  Q
    |||||||||||||  | |||||| ||||||||| |||||||||||||||| ||||||||||| |||||||    
T  74098 aaaactctcaagaccaatacaatttgaaagatcgagttcttctagagaagctaacatgagaggtggaata 74029  T

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Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 4 - 229
Target Start/End: Complemental strand, 616623 - 616398
Alignment:
Q  4 aggtgaaaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgagagatggaataattctgattttggtgcagtttgta 103  Q
    |||| ||||| ||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||    
T  616623 aggtaaaaaattctcaagattagtacaatctgaaagatcgagttcttctagagaaggtaacatgagagatggaataattttgattttggtgcattttata 616524  T
Q  104 accctaaagattttaagctcttcgacaaatccattcaccatgagaggaaagctgtctagttgataacaatgtgaaagatcgagttcttttagtgaagcca 203  Q
    | ||| ||||||||||| ||| | | |||||||||||||| ||||||||| || |||||   ||||||| |||||||||| |||||||  | ||||||||    
T  616523 atccttaagattttaagttctccaaaaaatccattcaccaggagaggaaaactttctagactataacaacgtgaaagatcaagttcttccaatgaagcca 616424  T
Q  204 aactaagaggtggaacagtcttgatt 229  Q
    || | ||||| |||||| ||| ||||    
T  616423 aattgagaggcggaacactctggatt 616398  T

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Target: chr6 (Bit Score: 97; Significance: 8e-48; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 4 - 220
Target Start/End: Original strand, 28489037 - 28489253
Alignment:
Q  4 aggtgaaaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgagagatggaataattctgattttggtgcagtttgta 103  Q
    ||||| |||||||||||||  | |||||| |||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||| || ||| ||    
T  28489037 aggtggaaaactctcaagaccagtacaatctgaaagatcaagttcttctagagaaggtaaaatgagtgatggaataattttgattttggtacaatttata 28489136  T
Q  104 accctaaagattttaagctcttcgacaaatccattcaccatgagaggaaagctgtctagttgataacaatgtgaaagatcgagttcttttagtgaagcca 203  Q
    ||||| ||||||||||| |   | | ||||| ||||||||||||||||||||| |||||   ||||||||||||||  || | |||||  ||||||||||    
T  28489137 acccttaagattttaagtttaccaagaaatctattcaccatgagaggaaagctttctaggctataacaatgtgaaaattctatttcttccagtgaagcca 28489236  T
Q  204 aactaagaggtggaaca 220  Q
    |||| ||||||||||||    
T  28489237 aactgagaggtggaaca 28489253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 4 - 220
Target Start/End: Original strand, 29801447 - 29801663
Alignment:
Q  4 aggtgaaaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgagagatggaataattctgattttggtgcagtttgta 103  Q
    ||||| |||||||||||||  | |||||| |||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||| || ||| ||    
T  29801447 aggtggaaaactctcaagaccagtacaatctgaaagatcaagttcttctagagaaggtaaaatgagtgatggaataattttgattttggtacaatttata 29801546  T
Q  104 accctaaagattttaagctcttcgacaaatccattcaccatgagaggaaagctgtctagttgataacaatgtgaaagatcgagttcttttagtgaagcca 203  Q
    ||||| ||||||||||| |   | | ||||| ||||||||||||||||||||| |||||   ||||||||||||||  || | |||||  ||||||||||    
T  29801547 acccttaagattttaagtttaccaagaaatctattcaccatgagaggaaagctttctaggctataacaatgtgaaaattctatttcttccagtgaagcca 29801646  T
Q  204 aactaagaggtggaaca 220  Q
    |||| ||||||||||||    
T  29801647 aactgagaggtggaaca 29801663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 190
Target Start/End: Original strand, 28475620 - 28475803
Alignment:
Q  7 tgaaaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgagagatggaataattctgattttggtgcagtttgtaacc 106  Q
    ||||||||| |||||| || |||||| | ||||||| |||||||||||||||||||||| ||||||| |||||| |||||||||| ||||   | |||||    
T  28475620 tgaaaaactgtcaagactagtacaatctaaaagatcgagttcttctagagaaggtaacacgagagattgaataagtctgattttgctgcaacctataacc 28475719  T
Q  107 ctaaagattttaagctcttcgacaaatccattcaccatgagaggaaagctgtctagttgataacaatgtgaaagatcgagttct 190  Q
    || ||||||||||| ||| | | ||||||| |||||| ||||||||| || |||||   || ||| |||||||||| |||||||    
T  28475720 ctcaagattttaagttctccaagaaatccactcaccacgagaggaaaactttctagactatgacagtgtgaaagattgagttct 28475803  T

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Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 29691311 - 29691500
Alignment:
Q  1 cataggtgaaaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgagagatggaataattctgattttggtgcagttt 100  Q
    |||| |||||||||| |||||| || |||||| | ||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| |||    |    
T  29691311 catatgtgaaaaactgtcaagactagtacaatctaaaagatcgagttcttctagagaaggtaacacgagagatggaataagtctgattttgctgctacct 29691410  T
Q  101 gtaaccctaaagattttaagctcttcgacaaatccattcaccatgagaggaaagctgtctagttgataacaatgtgaaagatcgagttct 190  Q
     ||||||| ||||||||||| ||| | | ||||||| |||||| | ||||||| || |||||   || ||| |||||||||| |||||||    
T  29691411 ataaccctcaagattttaagttctccaagaaatccactcaccacgggaggaaaactttctagactatgacagtgtgaaagattgagttct 29691500  T

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Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 29721434 - 29721526
Alignment:
Q  4 aggtgaaaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgagagatggaataattctgattttggtgca 96  Q
    |||||||||| |||||||||||||||| | ||||||||  |||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  29721434 aggtgaaaaattctcaagattactacactctgaaagatagagttcttctagagaaggtaacatgagaggtggaataattctgatttcggtgca 29721526  T

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Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 29672621 - 29672735
Alignment:
Q  8 gaaaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgagagatggaataattctgattttggtgcagtttgtaaccc 107  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||| | |   ||||| ||||||  || ||||||    
T  29672621 gaaaaactctcaagattaatacaatatgaaagatcaagtttttctagagagggtaacatgagagatggaagactgtggatttcggtgcaacttataaccc 29672720  T
Q  108 taaagattttaagct 122  Q
    | | |||||||||||    
T  29672721 tcaggattttaagct 29672735  T

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Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 28488902 - 28488971
Alignment:
Q  10 aaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgagagatggaata 79  Q
    ||||||||||||| || |||||| |||||||||||||||||||||||||| ||||||||||| |||||||    
T  28488902 aaaactctcaagactaatacaatctgaaagatcaagttcttctagagaagctaacatgagagttggaata 28488971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 29801312 - 29801381
Alignment:
Q  10 aaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgagagatggaata 79  Q
    ||||||||||||| || |||||| |||||||||||||||||||||||||| ||||||||||| |||||||    
T  29801312 aaaactctcaagactaatacaatctgaaagatcaagttcttctagagaagctaacatgagagttggaata 29801381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 29705167 - 29705248
Alignment:
Q  10 aaaactctcaagattactacaatatgaaagatcaagtt-cttctagagaaggtaacatgagagatggaataattctgatttt 90  Q
    |||||||||||||  | ||||||  ||||||||  ||| ||| | |||||||||||||||||||||||||||||||||||||    
T  29705167 aaaactctcaagaccagtacaatccgaaagatctggtttcttttggagaaggtaacatgagagatggaataattctgatttt 29705248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 143
Target Start/End: Original strand, 237197 - 237303
Alignment:
Q  37 aagatcaagttcttctagagaaggtaacatgagagatggaataattctgattttggtgcagtttgtaaccctaaagattttaagctcttcgacaaatcca 136  Q
    |||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||   | ||||||| ||||||||||| | | | |||||||||    
T  237197 aagatcgagttcttctagagaaggtaatatgagagatggaataattttgattttggtgcatcctataaccctcaagattttaagttttccaacaaatcca 237296  T
Q  137 ttcacca 143  Q
    |||||||    
T  237297 ttcacca 237303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 210594 - 210657
Alignment:
Q  6 gtgaaaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgag 69  Q
    ||||||||| ||||||| |||||||   ||||||||||||||||||||||||||||||||||||    
T  210594 gtgaaaaaccctcaagaatactacatcctgaaagatcaagttcttctagagaaggtaacatgag 210657  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 5919997 - 5920064
Alignment:
Q  10 aaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgagagatggaa 77  Q
    ||||||||| ||||||  ||||||||||||||||||| |||||| |||||  ||| |||||| |||||    
T  5919997 aaaactctcgagattatcacaatatgaaagatcaagtacttctaaagaagccaacttgagaggtggaa 5920064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 5919292 - 5919361
Alignment:
Q  10 aaaactctcaagattactacaatatgaaagatcaagttcttctagagaaggtaacatgagagatggaata 79  Q
    |||||||||||| |||  ||||||||||||||||||  ||||||| ||||  ||| |||||| |||||||    
T  5919292 aaaactctcaaggttatcacaatatgaaagatcaagaacttctagcgaagcaaacttgagaggtggaata 5919361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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