View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10576_low_14 (Length: 227)
Name: NF10576_low_14
Description: NF10576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10576_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 33 - 211
Target Start/End: Original strand, 3305400 - 3305580
Alignment:
| Q |
33 |
gttttataaacttggc--aacaactaaatgcaaaaacaacacctgcaatagtaaccaaaagaaatgtgcaaagaatagctgatgcattctagtggtaaag |
130 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3305400 |
gttttataaacttggcgcaacaactaaatgcaaaaacaacacctgcaatagtaaccaaaagaaatgtgcaaagaatagttgatgcattctagtggtaaag |
3305499 |
T |
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| Q |
131 |
aagcactagnnnnnnnnnnnnnnngaatctgcattaaaagtccacaatcacatttgacaaatagatcaataatataagaag |
211 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3305500 |
aagcactagaaaaaaaatcaaaaagaatctgcattaaaagtccacaatcacatttgacaaatagatcaataatataagaag |
3305580 |
T |
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