View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10576_low_4 (Length: 344)
Name: NF10576_low_4
Description: NF10576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10576_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 48108280 - 48108606
Alignment:
| Q |
1 |
aaataaggcaaagtcaattttacatagattgcgtcgagtagtgcaatgtgcataagggcttcctttaaagagtagatccacttttacaactccccttgca |
100 |
Q |
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| T |
48108280 |
aaataaggcaaagtcaattttacatagattgcgtcgagtagtgcaatgtgcataagggcttcctttaaagagtagatccacttttacaactccccttgca |
48108379 |
T |
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| Q |
101 |
attgcaaaacttatccattgatcaataatgctgttgtgtttactatttatatagaagttcacaaggaaagaatcgatctttgttccttgaaattttttga |
200 |
Q |
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| T |
48108380 |
attgcaaaacttatccattgatcaataatgttgttgtgtttactatttatatagaagttcacaaggaaagaatcgatctttgttccttgaaattttttga |
48108479 |
T |
|
| Q |
201 |
caaactggtttactagttttacaaattcatccgtacatagattcaaatcgacatatctatcaacagtagagccactagggacttcaatgagatacccgga |
300 |
Q |
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| T |
48108480 |
caaactggtttactagttttacaaattcatccgtacatagattcaaatcgacatatctatcaacagtagagacactagggacttcaatgagatacccgga |
48108579 |
T |
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| Q |
301 |
ttgtagcagatcgtcctcattgcttcc |
327 |
Q |
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| T |
48108580 |
ttgtagcagatcgtcctcattgcttcc |
48108606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 87 - 297
Target Start/End: Complemental strand, 47927043 - 47926833
Alignment:
| Q |
87 |
caactccccttgcaattgcaaaacttatccattgatcaataatgctgttgtgtttactatttatatagaagttcacaaggaaagaatcgatctttgttcc |
186 |
Q |
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| T |
47927043 |
caactccctttgcaattgcaaaacttatccattgatcaattgtgttgctttgttcacaatttaaatagaagctcactaggaaagaattgatcactgtgcc |
47926944 |
T |
|
| Q |
187 |
ttgaaattttttgacaaactggtttactagttttacaaattcatccgtacatagattcaaatcgacatatctatcaacagtagagccactagggacttca |
286 |
Q |
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| T |
47926943 |
aggaaaattcttgacaaattgatctactcgttttacaaattcatccttagtcttatacaaatcgatacatctatcaacagaaaagcgactagtgacatca |
47926844 |
T |
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| Q |
287 |
atgagataccc |
297 |
Q |
| |
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||||||||||| |
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| T |
47926843 |
atgagataccc |
47926833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 48454171 - 48454286
Alignment:
| Q |
96 |
ttgcaattgcaaaacttatccattgatcaataatgctgttgtgtttactatttatatagaagttcacaaggaaagaatcgatctttgttccttgaaattt |
195 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||| || |
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| T |
48454171 |
ttgcaattgcaaaacttatccattgatcaatagcattgttgtgttg----tttatattcaagttcacaaagaaagaatcgatctttgttccttgaaaatt |
48454266 |
T |
|
| Q |
196 |
tttgacaaactggtttacta |
215 |
Q |
| |
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||||||||||||||||||| |
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| T |
48454267 |
cttgacaaactggtttacta |
48454286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 207
Target Start/End: Original strand, 47052063 - 47052265
Alignment:
| Q |
5 |
aaggcaaagtcaattttacatagattgcgtcgagtagtgcaatgtgcataagggcttcctttaaagagtagatccacttttacaactccccttgcaattg |
104 |
Q |
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||||||| ||||| |||| | ||| ||| ||||| ||||||||| |||||| | ||| |||||||||||||| | || ||||||||||| |||| | |
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| T |
47052063 |
aaggcaaggtcaaatttataaggatcgcgacgagtggtgcaatgtttataaggagtacctagaaagagtagatccattcttccaactcccctttcaatgg |
47052162 |
T |
|
| Q |
105 |
caaaacttatccattgatcaataatgctgttgtgtttactatttatatagaagttcacaaggaaagaatcgatctttgttccttgaaattttttgacaaa |
204 |
Q |
| |
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||||||||| |||||||||||||||| | | |||| || || || ||||||||| || |||||||||||||| |||| || ||||| || |||| ||| |
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| T |
47052163 |
caaaacttacccattgatcaataatgtcgctatgttcacaatctaaatagaagttgacgaggaaagaatcgataattgtgccctgaaagttcttgataaa |
47052262 |
T |
|
| Q |
205 |
ctg |
207 |
Q |
| |
|
||| |
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|
| T |
47052263 |
ctg |
47052265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 87 - 178
Target Start/End: Complemental strand, 39411349 - 39411258
Alignment:
| Q |
87 |
caactccccttgcaattgcaaaacttatccattgatcaataatgctgttgtgtttactatttatatagaagttcacaaggaaagaatcgatc |
178 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| || || | |||| || ||||| |||||||||||| |||||||||| |||| |
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| T |
39411349 |
caactcccattgcaattgcaaaacttatccattgatcaatagtgttgctttgttcacaatttaaatagaagttcactaggaaagaattgatc |
39411258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 232
Target Start/End: Complemental strand, 50458859 - 50458673
Alignment:
| Q |
46 |
atgtgcataagggcttcctttaaagagtagatccacttttacaactccccttgcaattgcaaaacttatccattgatcaataatgctgttgtgtttacta |
145 |
Q |
| |
|
|||||||||||| |||||| ||| ||||||| | | || ||||||| |||||||| |||||||||||||||||||||||| || | | |||| || | |
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| T |
50458859 |
atgtgcataaggccttcctagaaaaagtagattgattctttcaactcctcttgcaatcgcaaaacttatccattgatcaatattgttactttgttcacaa |
50458760 |
T |
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| Q |
146 |
tttatatagaagttcacaaggaaagaatcgatctttgttccttgaaattttttgacaaactggtttactagttttacaaattcatcc |
232 |
Q |
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| || ||| || ||||| | ||||||||| || ||||| |||| ||| || ||||||||| ||| |||| | ||||||||||||||| |
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| T |
50458759 |
tctaaataaaaattcactacgaaagaatcaatatttgtgccttcaaaattcttgacaaaccggtctactcgatttacaaattcatcc |
50458673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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