View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10576_low_5 (Length: 321)
Name: NF10576_low_5
Description: NF10576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10576_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 280
Target Start/End: Original strand, 13799727 - 13799991
Alignment:
| Q |
17 |
aaataaagataatgtgtacaagctcactcatctcacctctccttctactatagcatcaacgacttggtcatccatcctcatcaccatctcctttatgccc |
116 |
Q |
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| T |
13799727 |
aaataaagataatgtgtacaagctcactcatctcacctctccttctactatagcatcaacgacttggtcatccatcctcatcgccatctcctttatgccc |
13799826 |
T |
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| Q |
117 |
ttcacattattaatattctaaagtaataactaaaattgaaaaatattgattaagtttgtttctcttttgttgtgagagtttgttgtgctcgaaaaggtag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13799827 |
ttcacattattaatattctaaagtaataactaaaattgcaaaatgttgattaagtttgtttctcttttgttgtgagagtttgttgtgctcgaaaaggtag |
13799926 |
T |
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| Q |
217 |
tgaagcttgttgtctttatttgta-aggcaggtggccagtgaatatgtcatacgccacaaaaaag |
280 |
Q |
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|||||||||||||||||||||| | |||||||||| |||||||| |||||||||||||||||||| |
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| T |
13799927 |
tgaagcttgttgtctttatttgcagaggcaggtggtcagtgaatctgtcatacgccacaaaaaag |
13799991 |
T |
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