View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10576_low_7 (Length: 288)
Name: NF10576_low_7
Description: NF10576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10576_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 25338455 - 25338193
Alignment:
| Q |
16 |
gtttggactttggagtgtggaaattaccttggcaaggtgcaatcttctggctgccactcccaatgttgataatcagaatctgttctaccattttttatac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25338455 |
gtttggactttggagtgtggaaattaccttggcaaggtgcaatcttctggctgccactcccaatgttgataatcagaatctgttctaccattttttatac |
25338356 |
T |
|
| Q |
116 |
aagaaaattgtctttctatatatggacaagttatgtcagtgtagattggctttattgattggttgaaaacccattttccattggcaatgttgcattcttc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25338355 |
aagaaaattgtctttctatatatggacaagttatgtcagtgtagattggctttattgattggttaaaaacccattttccattggcaatgttgcattcttc |
25338256 |
T |
|
| Q |
216 |
tgagtcaaaatcaaacctgtcatcaatccatgttgtatttacaatctcctcatcaactttctt |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25338255 |
tgagtcaaaatcaaacctgtcatcaatccatgttgtatttacaatctcctcatcaactttctt |
25338193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 45 - 247
Target Start/End: Complemental strand, 5230665 - 5230463
Alignment:
| Q |
45 |
tggcaaggtgcaatcttctggctgccactcccaatgttgataatcagaatctgttctaccattttttatacaagaaaattgtctttctatatatggacaa |
144 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||| | || ||||| || | ||||||||||||| | ||||| |||||||| |
|
|
| T |
5230665 |
tggcaaggtacaatcttctggctgccactcccaatgaagataatcagaatcattccttccattcttgacacaagaaaattgtttatctatgtatggacag |
5230566 |
T |
|
| Q |
145 |
gttatgtcagtgtagattggctttattgattggttgaaaacccattttccattggcaatgttgcattcttctgagtcaaaatcaaacctgtcatcaatcc |
244 |
Q |
| |
|
|| | || | ||| | ||||||||||| ||| || | |||||||||||| |||| ||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
5230565 |
cttttatctgagtataaaggctttattgaactgttaaatatccattttccattagcaacattgcattcttctggatcaaaatcaaacctatcatcaatcc |
5230466 |
T |
|
| Q |
245 |
atg |
247 |
Q |
| |
|
||| |
|
|
| T |
5230465 |
atg |
5230463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University