View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10576_low_8 (Length: 278)

Name: NF10576_low_8
Description: NF10576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10576_low_8
NF10576_low_8
[»] chr4 (4 HSPs)
chr4 (120-259)||(50680373-50680512)
chr4 (119-220)||(50662064-50662166)
chr4 (14-87)||(8096899-8096972)
chr4 (15-64)||(8097107-8097156)
[»] chr5 (5 HSPs)
chr5 (14-87)||(24958986-24959059)
chr5 (14-87)||(28850121-28850194)
chr5 (14-84)||(24959171-24959241)
chr5 (15-64)||(28849937-28849986)
chr5 (32-64)||(24959096-24959128)
[»] chr3 (12 HSPs)
chr3 (14-87)||(41004608-41004681)
chr3 (14-87)||(41013389-41013462)
chr3 (14-87)||(8199586-8199659)
chr3 (14-87)||(9549419-9549492)
chr3 (14-84)||(41004426-41004496)
chr3 (14-84)||(41013207-41013277)
chr3 (14-64)||(9549512-9549562)
chr3 (32-64)||(41004539-41004571)
chr3 (32-64)||(41013320-41013352)
chr3 (15-66)||(16818257-16818308)
chr3 (32-66)||(9549335-9549369)
chr3 (32-64)||(8199502-8199534)
[»] chr1 (3 HSPs)
chr1 (14-87)||(31546276-31546349)
chr1 (14-84)||(31546094-31546164)
chr1 (32-64)||(31546207-31546239)
[»] scaffold1649 (6 HSPs)
scaffold1649 (14-87)||(1398-1471)
scaffold1649 (14-71)||(928-985)
scaffold1649 (14-66)||(1305-1357)
scaffold1649 (32-64)||(844-876)
scaffold1649 (32-64)||(1038-1070)
scaffold1649 (14-46)||(1121-1153)
[»] chr2 (14 HSPs)
chr2 (14-87)||(15946846-15946919)
chr2 (14-87)||(35144929-35145002)
chr2 (14-87)||(42568350-42568423)
chr2 (14-87)||(15946560-15946633)
chr2 (14-87)||(25500914-25500987)
chr2 (24-87)||(24291304-24291367)
chr2 (14-84)||(35144747-35144817)
chr2 (14-64)||(24291234-24291284)
chr2 (15-64)||(42568558-42568607)
chr2 (32-64)||(15946956-15946988)
chr2 (32-64)||(35144860-35144892)
chr2 (32-83)||(15946670-15946721)
chr2 (32-64)||(15946762-15946794)
chr2 (14-66)||(25500842-25500894)
[»] chr8 (6 HSPs)
chr8 (14-83)||(17667450-17667519)
chr8 (14-83)||(39839436-39839505)
chr8 (14-83)||(17667935-17668004)
chr8 (33-83)||(17667727-17667777)
chr8 (35-83)||(39839519-39839567)
chr8 (14-51)||(17667677-17667714)
[»] chr7 (2 HSPs)
chr7 (14-83)||(13837611-13837680)
chr7 (32-83)||(13837517-13837568)
[»] chr6 (5 HSPs)
chr6 (14-87)||(25500693-25500766)
chr6 (14-66)||(5992496-5992548)
chr6 (14-66)||(5992403-5992455)
chr6 (14-64)||(25500786-25500836)
chr6 (32-66)||(25500609-25500643)
[»] scaffold1937 (4 HSPs)
scaffold1937 (14-72)||(342-400)
scaffold1937 (14-64)||(452-502)
scaffold1937 (32-64)||(258-290)
scaffold1937 (59-87)||(522-550)
[»] scaffold2150 (3 HSPs)
scaffold2150 (14-83)||(429-497)
scaffold2150 (14-66)||(614-666)
scaffold2150 (17-61)||(524-568)
[»] scaffold0002 (3 HSPs)
scaffold0002 (14-83)||(126234-126302)
scaffold0002 (14-51)||(126367-126404)
scaffold0002 (14-64)||(126455-126505)
[»] scaffold0156 (1 HSPs)
scaffold0156 (14-66)||(29299-29351)
[»] scaffold0083 (2 HSPs)
scaffold0083 (14-66)||(21631-21683)
scaffold0083 (32-64)||(21789-21821)
[»] scaffold0257 (1 HSPs)
scaffold0257 (32-64)||(1000-1032)


Alignment Details
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 120 - 259
Target Start/End: Complemental strand, 50680512 - 50680373
Alignment:
Q  120 gttgattacaaaatagccaaaagtaagttggcaatacaattaatttctttttatggaaatggaaacaccaaatcctaacttgagttgaaatattgaaaac 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50680512 gttgattacaaaatagccaaaagtaagttggcaatacaattaatttctctttatggaaatggaaacaccaaatcctaacttgagttgaaatattgaaaac 50680413  T
Q  220 atagtaaccaaataaaacatatgaacgaaagtccgagctc 259  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  50680412 atagtaaccaaataaaacatatgaacgaaagtccgagctc 50680373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 119 - 220
Target Start/End: Complemental strand, 50662166 - 50662064
Alignment:
Q  119 ggttgattacaaaatagccaaa-agtaagttggcaatacaattaatttctttttatggaaatggaaacaccaaatcctaacttgagttgaaatattgaaa 217  Q
    ||||||||||||||||| |||| ||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  50662166 ggttgattacaaaataggcaaagagtgagttggcactacaattattttctctttatggaaatggaaacaccaaatcctaacttgagttgaaatattgaaa 50662067  T
Q  218 aca 220  Q
    |||    
T  50662066 aca 50662064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 8096899 - 8096972
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcacgcct 87  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8096899 aggtaacaaaccatttactcaaccactgaaggggtacctgcccactaatcaaaaccaacggcggggtcacgcct 8096972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 8097107 - 8097156
Alignment:
Q  15 ggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatca 64  Q
    ||||||||||| || | |||||||||||||||||||||||||| ||||||    
T  8097107 ggtaacaaaccgttaattcaaccactgaaggggtaactgcccattaatca 8097156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 24958986 - 24959059
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcacgcct 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24958986 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcacgcct 24959059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 28850194 - 28850121
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcacgcct 87  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28850194 aggtaacaaaccatttactcaaccactgaaggggtacctgcccactaatcaaaaccaacggcggggtcacgcct 28850121  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 24959171 - 24959241
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcacg 84  Q
    ||||||||| | ||| | ||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  24959171 aggtaacaatctattaattcaaccattgaaggggtaactgtccactaatcaaaaccaacggcggggtcacg 24959241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 28849986 - 28849937
Alignment:
Q  15 ggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatca 64  Q
    ||||||||||| || | |||||||||||||||||||||||||| ||||||    
T  28849986 ggtaacaaaccgttaattcaaccactgaaggggtaactgcccattaatca 28849937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 24959096 - 24959128
Alignment:
Q  32 tcaaccactgaaggggtaactgcccactaatca 64  Q
    |||||||||||||||||||||||||||||||||    
T  24959096 tcaaccactgaaggggtaactgcccactaatca 24959128  T

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Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 41004681 - 41004608
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcacgcct 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41004681 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcacgcct 41004608  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 41013462 - 41013389
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcacgcct 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41013462 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcacgcct 41013389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 8199586 - 8199659
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcacgcct 87  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||| |||||||||||    
T  8199586 aggtaacaaaccatttactcaaccactgaaggggcaactgcccactaataaaaaacaacggcagggtcacgcct 8199659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 9549419 - 9549492
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcacgcct 87  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || | ||||||||    
T  9549419 aggtaacaaaccatttactcaaccactgaaggggtaaatgcccactaatcaaaaccaacgacgagatcacgcct 9549492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 41004496 - 41004426
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcacg 84  Q
    ||||||||| | ||| | ||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  41004496 aggtaacaatctattaattcaaccattgaaggggtaactgtccactaatcaaaaccaacggcggggtcacg 41004426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 41013277 - 41013207
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcacg 84  Q
    ||||||||| | ||| | ||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  41013277 aggtaacaatctattaattcaaccattgaaggggtaactgtccactaatcaaaaccaacggcggggtcacg 41013207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 9549512 - 9549562
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatca 64  Q
    |||||||||| | || | |||||||||||||||||||||||||||||||||    
T  9549512 aggtaacaaaacgttgattcaaccactgaaggggtaactgcccactaatca 9549562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 41004571 - 41004539
Alignment:
Q  32 tcaaccactgaaggggtaactgcccactaatca 64  Q
    |||||||||||||||||||||||||||||||||    
T  41004571 tcaaccactgaaggggtaactgcccactaatca 41004539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 41013352 - 41013320
Alignment:
Q  32 tcaaccactgaaggggtaactgcccactaatca 64  Q
    |||||||||||||||||||||||||||||||||    
T  41013352 tcaaccactgaaggggtaactgcccactaatca 41013320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 16818257 - 16818308
Alignment:
Q  15 ggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaa 66  Q
    |||||||||||||| |  |||||||||||||||||||  |||||||||||||    
T  16818257 ggtaacaaaccattaatccaaccactgaaggggtaacaacccactaatcaaa 16818308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 9549335 - 9549369
Alignment:
Q  32 tcaaccactgaaggggtaactgcccactaatcaaa 66  Q
    ||||||| |||||||||||||||||||||||||||    
T  9549335 tcaaccattgaaggggtaactgcccactaatcaaa 9549369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 8199502 - 8199534
Alignment:
Q  32 tcaaccactgaaggggtaactgcccactaatca 64  Q
    |||||| ||||||||||||||||||||||||||    
T  8199502 tcaaccgctgaaggggtaactgcccactaatca 8199534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 31546349 - 31546276
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcacgcct 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31546349 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcacgcct 31546276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 31546164 - 31546094
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcacg 84  Q
    ||||||||| | ||| | ||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  31546164 aggtaacaatctattaattcaaccattgaaggggtaactgtccactaatcaaaaccaacggcggggtcacg 31546094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 31546239 - 31546207
Alignment:
Q  32 tcaaccactgaaggggtaactgcccactaatca 64  Q
    |||||||||||||||||||||||||||||||||    
T  31546239 tcaaccactgaaggggtaactgcccactaatca 31546207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1649 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: scaffold1649
Description:

Target: scaffold1649; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 1398 - 1471
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcacgcct 87  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1398 aggtaataaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcacgcct 1471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1649; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 928 - 985
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaa 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  928 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaa 985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1649; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 1305 - 1357
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaa 66  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  1305 aggtaacaaaccatttactcaaccattgatggggtaactgcccactaatcaaa 1357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1649; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 844 - 876
Alignment:
Q  32 tcaaccactgaaggggtaactgcccactaatca 64  Q
    |||||||||||||||||||||||||||||||||    
T  844 tcaaccactgaaggggtaactgcccactaatca 876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1649; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 1038 - 1070
Alignment:
Q  32 tcaaccactgaaggggtaactgcccactaatca 64  Q
    |||||||||||||||||||||||||| ||||||    
T  1038 tcaaccactgaaggggtaactgcccattaatca 1070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1649; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 1121 - 1153
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggg 46  Q
    ||||||||||||||||||| |||||||||||||    
T  1121 aggtaacaaaccatttacttaaccactgaaggg 1153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 15946846 - 15946919
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcacgcct 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  15946846 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcgggatcacgcct 15946919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 35145002 - 35144929
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcacgcct 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35145002 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggtggggtcacgcct 35144929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 42568350 - 42568423
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcacgcct 87  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42568350 aggtaacaaaccatttactcaaccactgaaggggtacctgcccactaatcaaaaccaacggcggggtcacgcct 42568423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 15946560 - 15946633
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcacgcct 87  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||    
T  15946560 aggtaacaaaccatttactcaaccactgaaggggtaactacccactaatcaaaaccaacggcgggaccacgcct 15946633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 25500987 - 25500914
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcacgcct 87  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  25500987 aggtaacaaaccgtttactcaaccactgaaggggtaactgcccactaataaaaaacaacggcggggtcacgcct 25500914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 24291367 - 24291304
Alignment:
Q  24 ccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcacgcct 87  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  24291367 ccatttactcaaccactgaaggggtaactacccactaatcaaaaccaacggcagggtcacgcct 24291304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 35144817 - 35144747
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcacg 84  Q
    ||||||||| | ||| | ||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  35144817 aggtaacaatctattaattcaaccattgaaggggtaactgtccactaatcaaaaccaacggcggggtcacg 35144747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 24291284 - 24291234
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatca 64  Q
    |||||||||||| || | |||||||||||| ||||||||||||||||||||    
T  24291284 aggtaacaaaccgttaattcaaccactgaacgggtaactgcccactaatca 24291234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 42568558 - 42568607
Alignment:
Q  15 ggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatca 64  Q
    ||||||||||| || | |||||||||||||||||||||||||| ||||||    
T  42568558 ggtaacaaaccgttaattcaaccactgaaggggtaactgcccattaatca 42568607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 15946956 - 15946988
Alignment:
Q  32 tcaaccactgaaggggtaactgcccactaatca 64  Q
    |||||||||||||||||||||||||||||||||    
T  15946956 tcaaccactgaaggggtaactgcccactaatca 15946988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 35144892 - 35144860
Alignment:
Q  32 tcaaccactgaaggggtaactgcccactaatca 64  Q
    |||||||||||||||||||||||||||||||||    
T  35144892 tcaaccactgaaggggtaactgcccactaatca 35144860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 15946670 - 15946721
Alignment:
Q  32 tcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcac 83  Q
    |||||||||||| ||| |||| ||||||||||||||| ||||||||| ||||    
T  15946670 tcaaccactgaatgggcaactacccactaatcaaaacaaacggcgggatcac 15946721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 15946762 - 15946794
Alignment:
Q  32 tcaaccactgaaggggtaactgcccactaatca 64  Q
    |||||||||||||||| ||||||||||||||||    
T  15946762 tcaaccactgaaggggcaactgcccactaatca 15946794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 25500894 - 25500842
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaa 66  Q
    |||||||||||| || | |||||||||||||||||| |  |||||||||||||    
T  25500894 aggtaacaaaccgttaattcaaccactgaaggggtatcaacccactaatcaaa 25500842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 17667450 - 17667519
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcac 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17667450 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaaacaaaaccaacggcggggtcac 17667519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 39839436 - 39839505
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcac 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39839436 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaaacaaaaccaacggcggggtcac 39839505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 17667935 - 17668004
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcac 83  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17667935 aggtaacaaaccatttaatcaaccactgaaggggtaactgcccactaatcaaaaccaacggcgaggtcac 17668004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 17667727 - 17667777
Alignment:
Q  33 caaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcac 83  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17667727 caaccactgaaggggtaactgcccactaaacaaaaccaacggcggggtcac 17667777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 39839519 - 39839567
Alignment:
Q  35 accactgaaggggtaactgcccactaatcaaaaccaacggcggggtcac 83  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||    
T  39839519 accactgaagaggtaactgcccactaatcaaaaccaacggcagggtcac 39839567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 17667677 - 17667714
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaac 51  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  17667677 aggtaacaaaccatttaatcaaccactgaagaggtaac 17667714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 13837680 - 13837611
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcac 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13837680 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaaacaaaaccaacggcggggtcac 13837611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 13837568 - 13837517
Alignment:
Q  32 tcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcac 83  Q
    ||||||||||||| |||||||| ||||||||||||||||||||| |||||||    
T  13837568 tcaaccactgaagaggtaactgtccactaatcaaaaccaacggcagggtcac 13837517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 25500693 - 25500766
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcacgcct 87  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||| ||||||||    
T  25500693 aggtaacaaaccatttactcaaccactgaaggggtaaatgcccactaattaaaaccaacgacgggatcacgcct 25500766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 5992548 - 5992496
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaa 66  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5992548 aggtaacaaaccatttactcaaccattgaaggggtaactgcccactaatcaaa 5992496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 5992455 - 5992403
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaa 66  Q
    |||||| |||||||||||||||||||||||||||||||   ||||||||||||    
T  5992455 aggtaataaaccatttactcaaccactgaaggggtaacaaaccactaatcaaa 5992403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 25500786 - 25500836
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatca 64  Q
    |||||||||| | || | |||||||||||||||||||||||||||||||||    
T  25500786 aggtaacaaaacgttgattcaaccactgaaggggtaactgcccactaatca 25500836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 25500609 - 25500643
Alignment:
Q  32 tcaaccactgaaggggtaactgcccactaatcaaa 66  Q
    ||||||||||||||||||||| |||||||||||||    
T  25500609 tcaaccactgaaggggtaactacccactaatcaaa 25500643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1937 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: scaffold1937
Description:

Target: scaffold1937; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 400 - 342
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaac 72  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  400 aggtaacaaaccatttactcaaccactgaaggggtaattgcccactaatcaaaaccaac 342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1937; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 502 - 452
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatca 64  Q
    |||||||||| | || | |||||||||||||||||||||||||||||||||    
T  502 aggtaacaaaacgttaattcaaccactgaaggggtaactgcccactaatca 452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1937; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 290 - 258
Alignment:
Q  32 tcaaccactgaaggggtaactgcccactaatca 64  Q
    |||||||||||||||| ||||||||||||||||    
T  290 tcaaccactgaaggggcaactgcccactaatca 258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1937; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 87
Target Start/End: Complemental strand, 550 - 522
Alignment:
Q  59 taatcaaaaccaacggcggggtcacgcct 87  Q
    |||||||||||||||||||||||||||||    
T  550 taatcaaaaccaacggcggggtcacgcct 522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2150 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: scaffold2150
Description:

Target: scaffold2150; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 429 - 497
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcac 83  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||| ||||||||||||| |||||||    
T  429 aggtaacaaaccatttacttaac-attgaaggggtaactgcccactaaccaaaaccaacggcagggtcac 497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2150; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 614 - 666
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaa 66  Q
    |||||||||| |||| |  ||||||||||||||||||||||||||||||||||    
T  614 aggtaacaaaacattaatccaaccactgaaggggtaactgcccactaatcaaa 666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2150; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 524 - 568
Alignment:
Q  17 taacaaaccatttactcaaccactgaaggggtaactgcccactaa 61  Q
    ||||||| |||| | |||| |||||||||||||||||||||||||    
T  524 taacaaaacattaattcaaacactgaaggggtaactgcccactaa 568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 126302 - 126234
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaaaccaacggcggggtcac 83  Q
    ||||||||||||||| ||||||| | ||||||||| |||||||||||| |||||||||| ||||||||||    
T  126302 aggtaacaaaccattaactcaac-attgaaggggttactgcccactaaccaaaaccaacagcggggtcac 126234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 126404 - 126367
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaac 51  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  126404 aggtaacaaaccatttactcaaccactgaagaggtaac 126367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 126505 - 126455
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatca 64  Q
    |||||||||| | || | ||||||||||||| |||||||||||||||||||    
T  126505 aggtaacaaaacgttaattcaaccactgaagaggtaactgcccactaatca 126455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 29299 - 29351
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaa 66  Q
    ||||||||||||||| |  ||||||||||||||||||||||||||||||||||    
T  29299 aggtaacaaaccattaatccaaccactgaaggggtaactgcccactaatcaaa 29351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 21683 - 21631
Alignment:
Q  14 aggtaacaaaccatttactcaaccactgaaggggtaactgcccactaatcaaa 66  Q
    ||||||||||||||| |  |||||||| |||||||||||||||||||||||||    
T  21683 aggtaacaaaccattaatccaaccactaaaggggtaactgcccactaatcaaa 21631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 21821 - 21789
Alignment:
Q  32 tcaaccactgaaggggtaactgcccactaatca 64  Q
    |||||||||||||||||||||||||||||||||    
T  21821 tcaaccactgaaggggtaactgcccactaatca 21789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 1032 - 1000
Alignment:
Q  32 tcaaccactgaaggggtaactgcccactaatca 64  Q
    |||||||||||||||||||||||||||||||||    
T  1032 tcaaccactgaaggggtaactgcccactaatca 1000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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