View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10576_low_9 (Length: 262)
Name: NF10576_low_9
Description: NF10576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10576_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 100 - 244
Target Start/End: Complemental strand, 45763900 - 45763756
Alignment:
| Q |
100 |
catattgaggacgcggtagcagaatgaaaccaagtaaaaaacctaccacaagtcctccaatgtgagcaaggttatcaacgcgcggaaaaaggccaatagc |
199 |
Q |
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| T |
45763900 |
catattgaggacgcggtagcaaaatgaaaccaagtaaaaaacctaccacaagtcctccaatgtgagcaaggttatcaacgcgcggcaaaaggccaatagt |
45763801 |
T |
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| Q |
200 |
gaggttgatggcaatcataacaagaagggtgagcaatgccatcac |
244 |
Q |
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| T |
45763800 |
gaggttgatggcaatcataacaagaagggtgagcaatgccatcac |
45763756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 45763961 - 45763903
Alignment:
| Q |
12 |
agagacacaatccctagaacaaattggtaagcattgtattttgatttccggagaacacc |
70 |
Q |
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| T |
45763961 |
agagacacaatccctagaacaaattggtaagcattgtattttgatttccggagaacacc |
45763903 |
T |
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