View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10577_high_1 (Length: 535)
Name: NF10577_high_1
Description: NF10577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10577_high_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 8 - 535
Target Start/End: Original strand, 5232125 - 5232642
Alignment:
| Q |
8 |
gagcacagaggtaaagaattttacattaaattttcatattttctatagtgaaatatttgccaatatatcgacactattaattgtgtgtgtatgtatgtgt |
107 |
Q |
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| T |
5232125 |
gagcacagaggtaaagatttttacattaa-ttttcatattttttatagtgaaatatttgccaatatatcgacactattaattgtgtgtgta----tgtgt |
5232219 |
T |
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| Q |
108 |
ctccaatatttcagaaatcttttaggtgaagatttgggtccactaagttctaaggatcttgagcagcttgaaaggcaattggattcatctctgaagcaag |
207 |
Q |
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| T |
5232220 |
ctccaatatttcagaaatcttttaggtgaagatttgggtccactaagttctaaggatcttgagcagcttgaaaggcaattggattcatctctcaagcaag |
5232319 |
T |
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| Q |
208 |
tgagatcaacaaaggtatttgtttcagaaaattgatagaagtttcttaattaatatggatagaagtttatctcgattcaatactaaattgaacgatgtat |
307 |
Q |
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| T |
5232320 |
tgagatcaacaaaggtatttgtttcagaaaatagatagaagtttcttaattaatatggatagaagtttatctcgattcaatactaaattgaacgatctat |
5232419 |
T |
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| Q |
308 |
gaaacatagatacagacatcagacacgacactgacacttcaacaccagtaataatttgnnnnnnnnngaaatatttgatcgtactcacatgtgtcagtat |
407 |
Q |
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| T |
5232420 |
gaaacatagatatagacatcagacacgacactgacacttcaaca-cagtaataatttg-aaaaaaatgaaatatttgatcgtactcacatgtatcagtat |
5232517 |
T |
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| Q |
408 |
catgttggtgttggacaccgacacgtgttgacaccagacacgccttcaatcagagaatgcaattcatatgaatctctagcgtgtatctagtcagacatga |
507 |
Q |
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| T |
5232518 |
catgttggtgttggacaccgacacgtgttgacac---acacgccttcaatcagagaatgcaattcatatgaatctctagcgtgtatctagtcagacatga |
5232614 |
T |
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| Q |
508 |
ctctcatcttaatttttcattaattata |
535 |
Q |
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| T |
5232615 |
ctctcatcttaatttttcattaattata |
5232642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 119 - 225
Target Start/End: Original strand, 5655957 - 5656063
Alignment:
| Q |
119 |
cagaaatcttttaggtgaagatttgggtccactaagttctaaggatcttgagcagcttgaaaggcaattggattcatctctgaagcaagtgagatcaaca |
218 |
Q |
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| T |
5655957 |
cagaaaccttcttggtgaagacttaggtccattaggtaccaaagatcttgagcagcttgaacgccaacttgattcatctctcaagcaagtcaggtccacc |
5656056 |
T |
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| Q |
219 |
aaggtat |
225 |
Q |
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| T |
5656057 |
aaggtat |
5656063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 365
Target Start/End: Original strand, 12054309 - 12054349
Alignment:
| Q |
325 |
atcagacacgacactgacacttcaacaccagtaataatttg |
365 |
Q |
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| T |
12054309 |
atcaaacacgacactgacacgtcaacagcagtaataatttg |
12054349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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