View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10577_low_2 (Length: 414)
Name: NF10577_low_2
Description: NF10577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10577_low_2 |
 | |
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| [»] chr4 (6 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 6 - 414
Target Start/End: Original strand, 30719484 - 30719892
Alignment:
| Q |
6 |
gcatctacgcccctttgcatcctaatgtatccttcttcaccccaatcagttccccatgaattcttaaccaaccaatacttagttccatcattaccgacac |
105 |
Q |
| |
|
||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30719484 |
gcatcgactcccctttgcatcttaatgtatccttcttcaccccaatcagttccccatgaattcttaaccaaccaatacttggttccatcattaccgacac |
30719583 |
T |
|
| Q |
106 |
cataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagacaccacttttgtaaaactgaaagtcagacccactagcatcaat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30719584 |
cataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagacaccacttttgtaaaactgaaagtcagacccactagcatcaat |
30719683 |
T |
|
| Q |
206 |
agctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccggtaatggtaactgcatggatggat |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30719684 |
agctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccggtaatagtaactgcatggatggat |
30719783 |
T |
|
| Q |
306 |
gctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatcca |
405 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30719784 |
gctttgtttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatcca |
30719883 |
T |
|
| Q |
406 |
taagaccac |
414 |
Q |
| |
|
||||||||| |
|
|
| T |
30719884 |
taagaccac |
30719892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 6 - 414
Target Start/End: Complemental strand, 30881875 - 30881467
Alignment:
| Q |
6 |
gcatctacgcccctttgcatcctaatgtatccttcttcaccccaatcagttccccatgaattcttaaccaaccaatacttagttccatcattaccgacac |
105 |
Q |
| |
|
||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30881875 |
gcatcgactcccctttgcatcttaatgtatccttcttcaccccaatcagttccccatgaattcttaaccaaccaatacttggttccatcattaccgacac |
30881776 |
T |
|
| Q |
106 |
cataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagacaccacttttgtaaaactgaaagtcagacccactagcatcaat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30881775 |
cataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagacaccacttttgtaaaactgaaagtcagacccactagcatcaat |
30881676 |
T |
|
| Q |
206 |
agctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccggtaatggtaactgcatggatggat |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30881675 |
agctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccggtaatagtaactgcatggatggat |
30881576 |
T |
|
| Q |
306 |
gctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatcca |
405 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30881575 |
gctttgtttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatcca |
30881476 |
T |
|
| Q |
406 |
taagaccac |
414 |
Q |
| |
|
||||||||| |
|
|
| T |
30881475 |
taagaccac |
30881467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 6 - 414
Target Start/End: Original strand, 44730920 - 44731328
Alignment:
| Q |
6 |
gcatctacgcccctttgcatcctaatgtatccttcttcaccccaatcagttccccatgaattcttaaccaaccaatacttagttccatcattaccgacac |
105 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44730920 |
gcatccactcccctttgcatcctaatgtatccttcttcgccccaatcagttccccatgagttcttaaccaaccaatacttggttccatcattaccgacac |
44731019 |
T |
|
| Q |
106 |
cataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagacaccacttttgtaaaactgaaagtcagacccactagcatcaat |
205 |
Q |
| |
|
||||||| || || ||||||||||| |||||||| ||||||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
44731020 |
cataacccacagcggtgacaccatgatccaactcggttccacatgaaccactaaagacaccgcttttgtaaaattgaaagtcagatccactagcatcaat |
44731119 |
T |
|
| Q |
206 |
agctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccggtaatggtaactgcatggatggat |
305 |
Q |
| |
|
|| || ||||| ||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
44731120 |
ggcaacagaaataggttgatttgcgacagctttttgcaatgcctgctcattgttggcagggacatcttcatacccggtaatggtagctgcatgaatggac |
44731219 |
T |
|
| Q |
306 |
gctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatcca |
405 |
Q |
| |
|
||||| |||||| |||| ||||| ||||||||||||||||| ||| |||||||| | ||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
44731220 |
gctttgtttgcattgcatgttccgtcaacaccttgataagggtatgcggcttcagtactaagtccgtgattttgaatgatgaatttgaaagcatcgtcca |
44731319 |
T |
|
| Q |
406 |
taagaccac |
414 |
Q |
| |
|
||||||||| |
|
|
| T |
44731320 |
taagaccac |
44731328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 4 - 414
Target Start/End: Complemental strand, 30892960 - 30892550
Alignment:
| Q |
4 |
cagcatctacgcccctttgcatcctaatgtatccttcttcaccccaatcagttccccatgaattcttaaccaaccaatacttagttccatcattaccgac |
103 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
30892960 |
cagcatctacgctcctttgcatcctaatgtatccttcttcaccccaatcatttccccatgaattcttaaccaaccaatacttggttccatcattactaat |
30892861 |
T |
|
| Q |
104 |
accataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagacaccacttttgtaaaactgaaagtcagacccactagcatca |
203 |
Q |
| |
|
|||||||| || || || |||||||| ||||||| ||| |||||||||||||| |||||||||||||||||||| || || || || ||||| |||||| |
|
|
| T |
30892860 |
gccataacccacagcagtaacaccatgatccaactgagtaccacatgaaccagtgaagacaccacttttgtaaaattggaaatcggagccactcgcatca |
30892761 |
T |
|
| Q |
204 |
atagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccggtaatggtaactgcatggatgg |
303 |
Q |
| |
|
|| |||||||||||||||||||| ||||| ||||| |||||||| | ||||||||| || |||||||||||||| || | ||| ||| | ||| || | | |
|
|
| T |
30892760 |
atggctacggaaattggttgattagccactgctttttgcagtgcattctcattgtttgccgggacatcttcatatccagcaatagtagcagcaggggttg |
30892661 |
T |
|
| Q |
304 |
atgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatc |
403 |
Q |
| |
|
| | || |||||||||||||||||| |||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30892660 |
aagtttcatttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgtggagtccatgattttgaatgatgaatttgaaagcatcatc |
30892561 |
T |
|
| Q |
404 |
cataagaccac |
414 |
Q |
| |
|
||||||||||| |
|
|
| T |
30892560 |
cataagaccac |
30892550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 4 - 414
Target Start/End: Original strand, 16867305 - 16867715
Alignment:
| Q |
4 |
cagcatctacgcccctttgcatcctaatgtatccttcttcaccccaatcagttccccatgaattcttaaccaaccaatacttagttccatcattaccgac |
103 |
Q |
| |
|
||||||| || || ||||||||| |||||||||||||||||||||| || |||||||| || || ||||||||||||||||||||||||||||||| || |
|
|
| T |
16867305 |
cagcatcaacacctctttgcatcataatgtatccttcttcaccccattcggttccccaagagtttttaaccaaccaatacttagttccatcattactaac |
16867404 |
T |
|
| Q |
104 |
accataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagacaccacttttgtaaaactgaaagtcagacccactagcatca |
203 |
Q |
| |
|
||||||||| ||||| || |||||||| |||||||||||||| ||||||||||||||||| ||||||||||| || |||||||| || |||||||||||| |
|
|
| T |
16867405 |
accataacccacggcggtaacaccatgatccaactcagttccgcatgaaccagtaaagacgccacttttgtagaattgaaagtcggaaccactagcatca |
16867504 |
T |
|
| Q |
204 |
atagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccggtaatggtaactgcatggatgg |
303 |
Q |
| |
|
|| ||||||||||| |||||||| ||||| ||||| || ||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
16867505 |
atggctacggaaatcggttgattagccactgctttttgtagtgcctgctcattgttggtcgggacatcttcatacccagtaatggtaactgcattgatgg |
16867604 |
T |
|
| Q |
304 |
atgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatc |
403 |
Q |
| |
|
|| |||| ||||| |||| || || ||||||||||||||||| || | ||||| || || ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
16867605 |
atcctttgtttgcgttgcatgtcccgtcaacaccttgataagggtagttggcttcggtatttagtccatgattttgaatgatgaatttgaaagcatcgtc |
16867704 |
T |
|
| Q |
404 |
cataagaccac |
414 |
Q |
| |
|
||||||||||| |
|
|
| T |
16867705 |
cataagaccac |
16867715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 31185268 - 31185320
Alignment:
| Q |
18 |
ctttgcatcctaatgtatccttcttcaccccaatcagttccccatgaattctt |
70 |
Q |
| |
|
||||||||||| ||||| |||| ||||||||| |||| |||||||||||||| |
|
|
| T |
31185268 |
ctttgcatccttatgtaccctttttcaccccacacagtgccccatgaattctt |
31185320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 15 - 414
Target Start/End: Complemental strand, 8899481 - 8899082
Alignment:
| Q |
15 |
cccctttgcatcctaatgtatccttcttcaccccaatcagttccccatgaattcttaaccaaccaatacttagttccatcattaccgacaccataaccta |
114 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
8899481 |
cccctttgcatcataatgtaaccttcttcaccccaatcagttccccatgagttcttaaccaaccaatacttggttccatcattactgacaccataaccta |
8899382 |
T |
|
| Q |
115 |
cggctgtgacaccatggtccaactcagttccacatgaaccagtaaagacaccacttttgtaaaactgaaagtcagacccactagcatcaatagctacgga |
214 |
Q |
| |
|
|||| |||||||| || |||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||| || |
|
|
| T |
8899381 |
cggcagtgacaccgtgatccaactcagttccgcatgaaccggtaaatacaccacttttgtaaaattgaaagtcagagccactagcatcaattgctacaga |
8899282 |
T |
|
| Q |
215 |
aattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccggtaatggtaactgcatggatggatgctttattt |
314 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||| ||| || ||||||||||||||| |
|
|
| T |
8899281 |
aattggttgatttgccactgctttttgcagtgcttgctcattgttggcaggaacatcttcatacccggtaatagtagttgcttgaatggatgctttattt |
8899182 |
T |
|
| Q |
315 |
gcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatccataagaccac |
414 |
Q |
| |
|
||| | || |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8899181 |
gcattacatgttccatcaacaccctgataggggtattgagcttcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatccataagaccac |
8899082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 5 - 414
Target Start/End: Complemental strand, 31727649 - 31727240
Alignment:
| Q |
5 |
agcatctacgcccctttgcatcctaatgtatccttcttcaccccaatcagttccccatgaattcttaaccaaccaatacttagttccatcattaccgaca |
104 |
Q |
| |
|
|||||| || |||||||||||||||||||| |||||||||||||| | |||||||||||||||||| ||||||||||||| ||| |||| | ||| ||| |
|
|
| T |
31727649 |
agcatccacacccctttgcatcctaatgtacccttcttcaccccattgagttccccatgaattcttcaccaaccaatactcagtctcatcttcaccaaca |
31727550 |
T |
|
| Q |
105 |
ccataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagacaccacttttgtaaaactgaaagtcagacccactagcatcaa |
204 |
Q |
| |
|
||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||| |
|
|
| T |
31727549 |
ccataacctacaacagctacaccatgatccaactcagttccacatgaaccagtaaatacaccacttttgtaaaattggaagtcagagccactagcatcaa |
31727450 |
T |
|
| Q |
205 |
tagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccggtaatggtaactgcatggatgga |
304 |
Q |
| |
|
| || || |||| |||||||| || || ||||| |||| ||||||||||| || | ||||||| || ||||||| |||||| | ||| | || |
|
|
| T |
31727449 |
tggccaccgaaaccggttgattagctacggctttttgcaatgcctgctcatcatttacggggacattctcgtacccggaaatggttgcagcagagctgcc |
31727350 |
T |
|
| Q |
305 |
tgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatcc |
404 |
Q |
| |
|
| ||| | || | |||| ||||||||||||||||||||||| |||| |||||||||| | ||||||| |||||| |||||||||| |||||||||||| |
|
|
| T |
31727349 |
tacttcagttttattgcatgttccatcaacaccttgataagggtattcagcttcagtgctaagtccattattttggatgatgaattcaaaagcatcatcc |
31727250 |
T |
|
| Q |
405 |
ataagaccac |
414 |
Q |
| |
|
|||||||||| |
|
|
| T |
31727249 |
ataagaccac |
31727240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 4744959 - 4744895
Alignment:
| Q |
30 |
atgtatccttcttcaccccaatcagttccccatgaattcttaaccaaccaatacttagttccatc |
94 |
Q |
| |
|
||||| ||||||||||||||| | | ||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
4744959 |
atgtagccttcttcaccccaacctttaccccaagaattcttaatcaaccaatacttagttccatc |
4744895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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