View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10577_low_3 (Length: 278)
Name: NF10577_low_3
Description: NF10577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10577_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 42975646 - 42975386
Alignment:
| Q |
1 |
ggagctaacataaattttacgagggggccaattggccaaatataaagaagaatgaataaactacatctaaaaactaatatattaaatttaaccgataact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42975646 |
ggagctaacataaattttacgagggggccaattggccaaatataaagaagaatgaataaactacatctaaaaactaatatattaagtttaaccgataact |
42975547 |
T |
|
| Q |
101 |
gggggaaaaactatacgcggaaaatttcagaagaattttttcttatatgaaatcaaaaattaaaacttcactaagataataagaaagttcttt--nnnnn |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42975546 |
gggggaaaaactatacgcggaaaatttcagaagaattttttcttatattaaatcgaaaattaaaacttcactaagataataagagagttctttaaaaaaa |
42975447 |
T |
|
| Q |
199 |
nnnnctatttaggaaagttgagctcgacaacgcgtctaagagtaaatttcatccatagttg |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42975446 |
aaaactatttaggaaagttgagctcgacaacgcgtctaagagtaaatttcatccatagttg |
42975386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University