View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10577_low_6 (Length: 250)
Name: NF10577_low_6
Description: NF10577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10577_low_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 51311177 - 51310933
Alignment:
| Q |
6 |
agaagcaaaggaatttaagtcaataaacacaattagcatagcacagcatgtcaaagtgagccatcttggtcatatcatttaagttcaagtttatcataat |
105 |
Q |
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| T |
51311177 |
agaagcaaaggaatttaagtcaataaacacaattagcatagcacagcatgtcaaagtgagccatcttggtcatatcatttaagttcaagtttatcataat |
51311078 |
T |
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| Q |
106 |
caattaatcattcatatatagtagcaaaattttattggtgtctccattcataatacaatgaaatcattgcttcctcaattcacataaccaaattttgaca |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51311077 |
caattaatcattcatatatagtagcaaaattttattggtgtctccattcataatacaatgaaatcattgcttcctcaattcacataaccaaattttgaca |
51310978 |
T |
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| Q |
206 |
gccttacctttggcaacaaagcagccagtgtttttcctatcaatc |
250 |
Q |
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| T |
51310977 |
gccttacctttggcaacaaagcagccagtgtttttcctatcaatc |
51310933 |
T |
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