View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10577_low_7 (Length: 245)
Name: NF10577_low_7
Description: NF10577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10577_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 42198683 - 42198449
Alignment:
| Q |
1 |
acgagattgagtattgttgacatggaaatgaataatcttgttggtgccataccaatggagatttttcaattcaatgacttgacaaccttgaacttgcaag |
100 |
Q |
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| T |
42198683 |
acgagattgagtattgttgacatggaaatgaataatcttgttggtgccataccaatggagatttttcaattcaatgacttgacaaccttgaacttgcaag |
42198584 |
T |
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| Q |
101 |
gaaactctttgaatggttcgattcctcctgagttaaaaatggagcatctagagaccatggttatttcgaacatttggttgtcagggaacattcctaaatt |
200 |
Q |
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| T |
42198583 |
gaaactctttgaaaggttcgattcctcctgagttaaaaatggagcatctagagaccatggttatttcgaacaactggttgtcagggaacattcctaaatt |
42198484 |
T |
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| Q |
201 |
agaag----taagcggattgaaaatacttgtgatg |
231 |
Q |
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| T |
42198483 |
agaagtaattaagcggattgaaaatacttgtgatg |
42198449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 231
Target Start/End: Complemental strand, 42211228 - 42211024
Alignment:
| Q |
27 |
aatgaataatcttgttggtgccataccaatggagatttttcaattcaatgacttgacaaccttgaacttgcaaggaaactctttgaatggttcgattcct |
126 |
Q |
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| T |
42211228 |
aatgaataagcttgctggtgtcatacccatggagatttttcaactctctggcttgacaactttatacttacatggaaattctctgaacggttcgcttcct |
42211129 |
T |
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| Q |
127 |
cctgagttaaaaatggagcatctagagaccatggttatttcgaacatttggttgtcagggaacattcctaaattagaagtaagcggattgaaaatacttg |
226 |
Q |
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| T |
42211128 |
cctcaattcaaaatggagcagctagaggccatggttgtttcggacaacaagctgtcagggaacattcctaaaatcgaagttaacggattgaaaacactta |
42211029 |
T |
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| Q |
227 |
tgatg |
231 |
Q |
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| T |
42211028 |
tgatg |
42211024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 231
Target Start/End: Complemental strand, 42223445 - 42223240
Alignment:
| Q |
26 |
aaatgaataatcttgttggtgccataccaatggagatttttcaattcaatgacttgacaaccttgaacttgcaaggaaactctttgaatggttcgattcc |
125 |
Q |
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|||||||||| |||||||||| |||||||||||||||||||||| || | ||||||||| || |||| || ||||| ||| ||||||||||| |||| |
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| T |
42223445 |
aaatgaataagcttgttggtgtcataccaatggagatttttcaactctctagcttgacaactttatacttacatggaaattctctgaatggttcgcttcc |
42223346 |
T |
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| Q |
126 |
tcctgagttaaaaatggagcatctagagaccatggttatttcgaacatttggttgtcagggaacattcctaaattagaagtaagcggattgaaaatactt |
225 |
Q |
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|||| ||| || |||||||| |||| | |||||||| |||| ||| | |||||||||||||||||||| | ||||| ||||||||||| ||| |
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| T |
42223345 |
tccttcgttcaagatggagcagctagtggccatggttgtttcagacaacatgctgtcagggaacattcctaaaatcgaagttgacggattgaaaacacta |
42223246 |
T |
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| Q |
226 |
gtgatg |
231 |
Q |
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|||||| |
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| T |
42223245 |
gtgatg |
42223240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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