View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10577_low_8 (Length: 212)

Name: NF10577_low_8
Description: NF10577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10577_low_8
NF10577_low_8
[»] chr3 (18 HSPs)
chr3 (17-196)||(10376059-10376238)
chr3 (17-196)||(10434258-10434437)
chr3 (22-196)||(8860967-8861141)
chr3 (17-196)||(10076942-10077124)
chr3 (17-192)||(9838537-9838712)
chr3 (17-192)||(9849415-9849590)
chr3 (22-196)||(10888987-10889161)
chr3 (17-164)||(10088466-10088613)
chr3 (17-164)||(10195349-10195496)
chr3 (22-196)||(11160231-11160405)
chr3 (17-196)||(10580277-10580456)
chr3 (22-196)||(11768915-11769089)
chr3 (22-192)||(11149072-11149242)
chr3 (22-192)||(11131244-11131414)
chr3 (22-196)||(10364012-10364186)
chr3 (29-196)||(13289353-13289520)
chr3 (163-196)||(10500375-10500408)
chr3 (29-196)||(13332592-13332759)
[»] chr2 (1 HSPs)
chr2 (17-196)||(26906573-26906752)
[»] chr8 (1 HSPs)
chr8 (23-196)||(44957923-44958096)
[»] scaffold0002 (1 HSPs)
scaffold0002 (29-196)||(146153-146320)
[»] chr4 (1 HSPs)
chr4 (163-196)||(17853161-17853194)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 10376238 - 10376059
Alignment:
Q  17 gctcaaaacaaaactaatcaggtgttgaacttcctttcttctccttttaacaccttctacagagagatcaattctcaaatgaaggtcatgtgtgatagcc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10376238 gctcaaaacaaaactaatcaggtgttgaacttcctttcttctccttttaacaccttctacagagagatcaattctcaaatgaaggtcatgtgtgatagcc 10376139  T
Q  117 tgcaattctttgcacagtataaagatatacttggtctgcaaactaaaagtggtagagtttctcgtagaacaccttcaagt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10376138 tgcaattctttgcacagtataaagatatacttggtctgcaaactaaaagtggtagagtttctcgtagaacaccttcaagt 10376059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 10434437 - 10434258
Alignment:
Q  17 gctcaaaacaaaactaatcaggtgttgaacttcctttcttctccttttaacaccttctacagagagatcaattctcaaatgaaggtcatgtgtgatagcc 116  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |  |||||||||||||||||||||||||||||| |||||||||| |||     
T  10434437 gctcaaaacaaaactaatcaggtgttgaacttcctttcatctccttttaatagtttctacagagagatcaattctcaaatgaagatcatgtgtgaaagct 10434338  T
Q  117 tgcaattctttgcacagtataaagatatacttggtctgcaaactaaaagtggtagagtttctcgtagaacaccttcaagt 196  Q
    ||||| | ||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| |||||  |||||||||    
T  10434337 tgcaactttttgcacagaataaagatatacttggtctgcaaaccaaaagtgggagagtttctcatagaaatccttcaagt 10434258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 22 - 196
Target Start/End: Original strand, 8860967 - 8861141
Alignment:
Q  22 aaacaaaactaatcaggtgttgaacttcctttcttctccttttaacaccttctacagagagatcaattctcaaatgaaggtcatgtgtgatagcctgcaa 121  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||    
T  8860967 aaacaaaactaatcaggtgtggaacttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaa 8861066  T
Q  122 ttctttgcacagtataaagatatacttggtctgcaaactaaaagtggtagagtttctcgtagaacaccttcaagt 196  Q
     | || |||||  |||||||||| |||||| |||||||||||| ||||| ||||||||||||||| |||||||||    
T  8861067 attttcgcacaacataaagatatccttggtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagt 8861141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 10076942 - 10077124
Alignment:
Q  17 gctcaaaacaaaactaatcaggtgttgaacttcctttcttctccttttaacaccttctacagagagatcaattctcaaatgaaggtcatgtgtgatagcc 116  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||| ||||||||||||||||| |||| |||||||||| ||      
T  10076942 gctcaaaacaaaactaatcaggtgttgaacttcctttcatctccttttaatagcttctacaaagagatcaattctcaaacgaagatcatgtgtgaaaggt 10077041  T
Q  117 tgcaattctttgcacagtataaagatatacttggtctgcaaactaaaagtggtagag---tttctcgtagaacaccttcaagt 196  Q
    ||||||| ||||||||| |||||||| ||||||||||||||||||||| || |||||   |||||||||||||||||||||||    
T  10077042 tgcaattgtttgcacagaataaagatgtacttggtctgcaaactaaaattgctagagtaatttctcgtagaacaccttcaagt 10077124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 9838537 - 9838712
Alignment:
Q  17 gctcaaaacaaaactaatcaggtgttgaacttcctttcttctccttttaacaccttctacagagagatcaattctcaaatgaaggtcatgtgtgatagcc 116  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |  || |||| |||||||||||| || |||||| ||||||||||||||     
T  9838537 gctcaaaacaaaactaatcaggtgtggaacttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagct 9838636  T
Q  117 tgcaattctttgcacagtataaagatatacttggtctgcaaactaaaagtggtagagtttctcgtagaacaccttc 192  Q
    ||||| | | ||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  9838637 tgcaactttatgcacagaataaagatatacttggtttgcaaactaaaagtgctagagtttctcgtagaacaccttc 9838712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 9849415 - 9849590
Alignment:
Q  17 gctcaaaacaaaactaatcaggtgttgaacttcctttcttctccttttaacaccttctacagagagatcaattctcaaatgaaggtcatgtgtgatagcc 116  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |  || |||| |||||||||||| || |||||| ||||||||||||||     
T  9849415 gctcaaaacaaaactaatcaggtgtggaacttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagct 9849514  T
Q  117 tgcaattctttgcacagtataaagatatacttggtctgcaaactaaaagtggtagagtttctcgtagaacaccttc 192  Q
    ||||| | | ||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  9849515 tgcaactttatgcacagaataaagatatacttggtttgcaaactaaaagtgctagagtttctcgtagaacaccttc 9849590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 22 - 196
Target Start/End: Original strand, 10888987 - 10889161
Alignment:
Q  22 aaacaaaactaatcaggtgttgaacttcctttcttctccttttaacaccttctacagagagatcaattctcaaatgaaggtcatgtgtgatagcctgcaa 121  Q
    ||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| |||||    
T  10888987 aaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtaatagcttgcaa 10889086  T
Q  122 ttctttgcacagtataaagatatacttggtctgcaaactaaaagtggtagagtttctcgtagaacaccttcaagt 196  Q
     | ||||||||  |||||||||| |||||| |||||||||||| ||||| ||||||||||||||| |||||||||    
T  10889087 ctttttgcacaacataaagatatccttggtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagt 10889161  T

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Target: chr3; HSP #8
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 10088466 - 10088613
Alignment:
Q  17 gctcaaaacaaaactaatcaggtgttgaacttcctttcttctccttttaacaccttctacagagagatcaattctcaaatgaaggtcatgtgtgatagcc 116  Q
    ||||||||||||| | |||||||| ||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||| |||||||||| |||     
T  10088466 gctcaaaacaaaagttatcaggtgatgaacttcctttcatctccttttaatagcttctacagagagatcaattctcaaatgaagatcatgtgtgaaagct 10088565  T
Q  117 tgcaattctttgcacagtataaagatatacttggtctgcaaactaaaa 164  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  10088566 tgcaattgtttgcacagaataaagatatacttggtctgcaaactaaaa 10088613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 10195349 - 10195496
Alignment:
Q  17 gctcaaaacaaaactaatcaggtgttgaacttcctttcttctccttttaacaccttctacagagagatcaattctcaaatgaaggtcatgtgtgatagcc 116  Q
    ||||||||||||| | |||||||| ||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||| |||||||||| |||     
T  10195349 gctcaaaacaaaagttatcaggtgatgaacttcctttcatctccttttaatagcttctacagagagatcaattctcaaatgaagatcatgtgtgaaagct 10195448  T
Q  117 tgcaattctttgcacagtataaagatatacttggtctgcaaactaaaa 164  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  10195449 tgcaattgtttgcacagaataaagatatacttggtctgcaaactaaaa 10195496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 196
Target Start/End: Complemental strand, 11160405 - 11160231
Alignment:
Q  22 aaacaaaactaatcaggtgttgaacttcctttcttctccttttaacaccttctacagagagatcaattctcaaatgaaggtcatgtgtgatagcctgcaa 121  Q
    ||||||||||| |||||||| || |||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| |||||    
T  11160405 aaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccttctatagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaa 11160306  T
Q  122 ttctttgcacagtataaagatatacttggtctgcaaactaaaagtggtagagtttctcgtagaacaccttcaagt 196  Q
     | || |||||  |||||||||| |||||| |||||| ||||| ||||| ||||||||||||||| |||||||||    
T  11160305 cttttcgcacaacataaagatatccttggtttgcaaagtaaaattggtaaagtttctcgtagaaccccttcaagt 11160231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 10580277 - 10580456
Alignment:
Q  17 gctcaaaacaaaactaatcaggtgttgaacttcctttcttctccttttaacaccttctacagagagatcaattctcaaatgaaggtcatgtgtgatagcc 116  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||| |||||||||||||| || |||||| |||||||||| | ||    
T  10580277 gctcaaaacaaaactaatcaggtgtggaacttcctttcttctccttttaatagcttctatagagagatcaattcccagatgaagatcatgtgtgaaaacc 10580376  T
Q  117 tgcaattctttgcacagtataaagatatacttggtctgcaaactaaaagtggtagagtttctcgtagaacaccttcaagt 196  Q
    ||||||| |||||| |  |||||||| | |||||| |||||||||| |||| ||||||||||| | |||| |||||||||    
T  10580377 tgcaattgtttgcaaatcataaagatgtccttggtttgcaaactaagagtgctagagtttctcatggaactccttcaagt 10580456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 196
Target Start/End: Original strand, 11768915 - 11769089
Alignment:
Q  22 aaacaaaactaatcaggtgttgaacttcctttcttctccttttaacaccttctacagagagatcaattctcaaatgaaggtcatgtgtgatagcctgcaa 121  Q
    |||||||||||||||||||| |||||| ||||| || |||||||| | | ||||  ||||||||||||| || |||||| |||||||||| |||||||||    
T  11768915 aaacaaaactaatcaggtgtggaacttactttcatccccttttaaaaacatctatggagagatcaattcccatatgaagatcatgtgtgaaagcctgcaa 11769014  T
Q  122 ttctttgcacagtataaagatatacttggtctgcaaactaaaagtggtagagtttctcgtagaacaccttcaagt 196  Q
     | ||||||||  ||||||||||| | ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  11769015 ctttttgcacaaaataaagatatattaggtttgcaaactaaaagtgctagagtttctcgtagaacaccttcaagt 11769089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 11149242 - 11149072
Alignment:
Q  22 aaacaaaactaatcaggtgttgaacttcctttcttctccttttaacaccttctacagagagatcaattctcaaatgaaggtcatgtgtgatagcctgcaa 121  Q
    ||||||||||| |||||||| || ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||  ||||||||| | |||||||    
T  11149242 aaacaaaactagtcaggtgtggagcttcctttcttctccttttaacaccatctacagagagatcaattcccaaatgaagaccatgtgtgacaacctgcaa 11149143  T
Q  122 ttctttgcacagtataaagatatacttggtctgcaaactaaaagtggtagagtttctcgtagaacaccttc 192  Q
     | ||||||||  | |||||||| |||||| ||||||||||||||| |||| |||  | ||||||||||||    
T  11149142 atttttgcacaaaacaaagatatccttggtttgcaaactaaaagtgctagaattttccatagaacaccttc 11149072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 11131414 - 11131244
Alignment:
Q  22 aaacaaaactaatcaggtgttgaacttcctttcttctccttttaacaccttctacagagagatcaattctcaaatgaaggtcatgtgtgatagcctgcaa 121  Q
    |||||||||||||||||| | |||||||||||||||||||||||| | | ||||  ||||||||||||| ||||| |||  ||||||||| | |||||||    
T  11131414 aaacaaaactaatcaggtctggaacttcctttcttctccttttaaaaacatctatggagagatcaattcccaaattaagaccatgtgtgacaacctgcaa 11131315  T
Q  122 ttctttgcacagtataaagatatacttggtctgcaaactaaaagtggtagagtttctcgtagaacaccttc 192  Q
     | ||||||||  | |||||||| |||||| | ||||||||||||| |||| |||  | ||||||||||||    
T  11131314 atttttgcacaaaacaaagatatccttggtttacaaactaaaagtgctagaattttccatagaacaccttc 11131244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 196
Target Start/End: Complemental strand, 10364186 - 10364012
Alignment:
Q  22 aaacaaaactaatcaggtgttgaacttcctttcttctccttttaacaccttctacagagagatcaattctcaaatgaaggtcatgtgtgatagcctgcaa 121  Q
    ||||| || ||||||||||| |||||||||||  |||||||| || | |||||| |||||||||||||| || |||||| |||||||||| |||||||||    
T  10364186 aaacagaagtaatcaggtgtggaacttccttttatctcctttcaatagcttctatagagagatcaattcccagatgaagatcatgtgtgaaagcctgcaa 10364087  T
Q  122 ttctttgcacagtataaagatatacttggtctgcaaactaaaagtggtagagtttctcgtagaacaccttcaagt 196  Q
       |||| | ||   |||||||||||| || |||||||||||||    || ||||| ||||||||||||||||||    
T  10364086 cattttgaaaagagaaaagatatacttcgtttgcaaactaaaagcacaagggtttcacgtagaacaccttcaagt 10364012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 196
Target Start/End: Original strand, 13289353 - 13289520
Alignment:
Q  29 actaatcaggtgttgaacttcctttcttctccttttaacaccttctacagagagatcaattctcaaatgaaggtcatgtgtgatagcctgcaattctttg 128  Q
    ||||||||||| | |||| || |||| ||||||||||| ||  ||||  ||||||||||||| ||||||||| | |||||| | || |||||  | ||||    
T  13289353 actaatcaggtttggaacctcttttcatctccttttaaaactctctatggagagatcaattcacaaatgaagattatgtgtcaaaggctgcagctttttg 13289452  T
Q  129 cacagtataaagatatacttggtctgcaaactaaaagtggtagagtttctcgtagaacaccttcaagt 196  Q
    ||||  | | |||||| |||||  ||||||||   || || |||||||||| |||||| |||||||||    
T  13289453 cacaacagagagatatccttggcttgcaaactgtgagagggagagtttctcttagaacgccttcaagt 13289520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 196
Target Start/End: Original strand, 10500375 - 10500408
Alignment:
Q  163 aagtggtagagtttctcgtagaacaccttcaagt 196  Q
    ||||||||||||||||||||||||||||||||||    
T  10500375 aagtggtagagtttctcgtagaacaccttcaagt 10500408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 196
Target Start/End: Original strand, 13332592 - 13332759
Alignment:
Q  29 actaatcaggtgttgaacttcctttcttctccttttaacaccttctacagagagatcaattctcaaatgaaggtcatgtgtgatagcctgcaattctttg 128  Q
    ||||||||||| | |||| || |||| ||||||||||| |   ||||  ||||||||||||| ||||||||| | |||||| | || |||||| | ||||    
T  13332592 actaatcaggtttggaacctcttttcgtctccttttaaaaatctctatggagagatcaattcacaaatgaagattatgtgtcaaaggctgcaactttttg 13332691  T
Q  129 cacagtataaagatatacttggtctgcaaactaaaagtggtagagtttctcgtagaacaccttcaagt 196  Q
    ||||  | | |||||| |||||  ||||||||   || |  |||||||||| |||||| |||||||||    
T  13332692 cacaacagagagatattcttggcttgcaaactgtgagcgcgagagtttctcttagaacgccttcaagt 13332759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 26906573 - 26906752
Alignment:
Q  17 gctcaaaacaaaactaatcaggtgttgaacttcctttcttctccttttaacaccttctacagagagatcaattctcaaatgaaggtcatgtgtgatagcc 116  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||| | |||||||| ||||    
T  26906573 gctcaaaacaaaactaatcaggtgttgaacttcctttcatctccttttaatagcttctacagagagatcaattctcaaatgaagataatgtgtgaaagcc 26906672  T
Q  117 tgcaattctttgcacagtataaagatatacttggtctgcaaactaaaagtggtagagtttctcgtagaacaccttcaagt 196  Q
    ||||||| ||||||||  |||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  26906673 tgcaattgtttgcacaacataaagatatccttggtttgcaaactaaaagtgctagagtttctcgtagaacaccttcaagt 26906752  T

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Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 44958096 - 44957923
Alignment:
Q  23 aacaaaactaatcaggtgttgaacttcctttcttctccttttaacaccttctacagagagatcaattctcaaatgaaggtcatgtgtgatagcctgcaat 122  Q
    ||||||||||||||||| | |||||||||||| ||||||||||| | ||||||  ||||||||||||||||||||||| | ||||||||   |||||||     
T  44958096 aacaaaactaatcaggtctggaacttcctttcatctccttttaaaaacttctatggagagatcaattctcaaatgaagattatgtgtgaatccctgcaac 44957997  T
Q  123 tctttgcacagtataaagatatacttggtctgcaaactaaaagtggtagagtttctcgtagaacaccttcaagt 196  Q
    | ||||||||| ||||||||||| ||||| || |||||||||||| ||||||||||| ||||||||||||||||    
T  44957996 tttttgcacagcataaagatataattggtttggaaactaaaagtgctagagtttctcatagaacaccttcaagt 44957923  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 196
Target Start/End: Complemental strand, 146320 - 146153
Alignment:
Q  29 actaatcaggtgttgaacttcctttcttctccttttaacaccttctacagagagatcaattctcaaatgaaggtcatgtgtgatagcctgcaattctttg 128  Q
    ||||||||||| | |||| || |||| ||||||||||| |   ||||  ||||||||||||| ||||||||| | |||||| | || |||||| | ||||    
T  146320 actaatcaggtttggaacctcttttcatctccttttaaaaatctctatggagagatcaattcacaaatgaagattatgtgtcaaaggctgcaactttttg 146221  T
Q  129 cacagtataaagatatacttggtctgcaaactaaaagtggtagagtttctcgtagaacaccttcaagt 196  Q
    ||||  | | |||||| |||||  ||||||||   || || ||||||||||  ||||| |||||||||    
T  146220 cacaacagagagatatccttggcttgcaaactgtgagcgggagagtttctctaagaacgccttcaagt 146153  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 196
Target Start/End: Complemental strand, 17853194 - 17853161
Alignment:
Q  163 aagtggtagagtttctcgtagaacaccttcaagt 196  Q
    |||||||||||||||||||||||| |||||||||    
T  17853194 aagtggtagagtttctcgtagaaccccttcaagt 17853161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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