View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10578_high_1 (Length: 335)
Name: NF10578_high_1
Description: NF10578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10578_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 17794844 - 17794526
Alignment:
| Q |
1 |
ccctcactaatttctttgattgaagcagtagtaatccttgatggtgataatgaccaagccttttgtgccacatctctgtgacactttctttgacagtaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17794844 |
ccctcactaatttctttgattgaagcagtagtaatccttgatggtgataatgaccaagccttttgtgccacatctctgtgacactttctttgacagtaaa |
17794745 |
T |
|
| Q |
101 |
tgcagattgcttctcctctaatggattaagtgtgaagctctttcccctcatcttgaccttgaacatctcttggccagaagcatcttttatcaggcagtgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17794744 |
tgcagattgcttctcctctaatggattaagtgtgaagctctttcccctcatcttgaccttgaacatctcttggccagaagcatcttttatcaggcagtgt |
17794645 |
T |
|
| Q |
201 |
ttgtcttcaaagtgtaccttgaaacctttctctaacaattgaccaacacttaacaaattttggtcaatttctggaacatagagaacatcagagataagtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17794644 |
ttgtcttcaaagtgtaccttgaaacctttctctaacaattgaccaacacttaacaaattttggtcaatttctggaacatagagaacatcagagataagtt |
17794545 |
T |
|
| Q |
301 |
ttgtacccgaacaacttac |
319 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
17794544 |
ttgtacccgaacaacttac |
17794526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 7035424 - 7035106
Alignment:
| Q |
1 |
ccctcactaatttctttgattgaagcagtagtaatccttgatggtgataatgaccaagccttttgtgccacatctctgtgacactttctttgacagtaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7035424 |
ccctcactaatttctttgattgaagcagtagtaatccttgatggtgataatgaccaagcctcttgtgccacatctctgtgacactttctttgacagtaaa |
7035325 |
T |
|
| Q |
101 |
tgcagattgcttctcctctaatggattaagtgtgaagctctttcccctcatcttgaccttgaacatctcttggccagaagcatcttttatcaggcagtgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7035324 |
tgcagattgcttctcctctaatggattaagtgtgaagctctttcccctcatcttgaccttgaacatctcttggccagaagcatcttttatcaggcagtgt |
7035225 |
T |
|
| Q |
201 |
ttgtcttcaaagtgtaccttgaaacctttctctaacaattgaccaacacttaacaaattttggtcaatttctggaacatagagaacatcagagataagtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7035224 |
ttgtcttcaaagtgtaccttgaaacctttctctaacaattgaccaacacttaacaaattttggtcaatttctggaacatagagaacatcagagataagtt |
7035125 |
T |
|
| Q |
301 |
ttgtacccgaacaacttac |
319 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
7035124 |
ttgtacccgaacaacttac |
7035106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 301
Target Start/End: Complemental strand, 31082378 - 31082300
Alignment:
| Q |
223 |
aacctttctctaacaattgaccaacacttaacaaattttggtcaatttctggaacatagagaacatcagagataagttt |
301 |
Q |
| |
|
||||||| || |||||||| ||| || ||||||||||| | |||||| |||||||| | |||||||||||||||||| |
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|
| T |
31082378 |
aacctttttccaacaattgtggaacgctcaacaaattttgattaatttcaggaacatataaaacatcagagataagttt |
31082300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 1542722 - 1542404
Alignment:
| Q |
1 |
ccctcactaatttctttgattgaagcagtagtaatccttgatggtgataatgaccaagccttttgtgccacatctctgtgacactttctttgacagtaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
1542722 |
ccctcactaatttctttgattgaagcagtagtaatccttgatggtgataatgaccaagcctcttgtgccacatctctgtgacactttctttgacagtaaa |
1542623 |
T |
|
| Q |
101 |
tgcagattgcttctcctctaatggattaagtgtgaagctctttcccctcatcttgaccttgaacatctcttggccagaagcatcttttatcaggcagtgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1542622 |
tgcagattgcttctcctctaatggattaagtgtgaagctctttcccctcatcttgaccttgaacatctcttggccagaagcatcttttatcaggcagtgt |
1542523 |
T |
|
| Q |
201 |
ttgtcttcaaagtgtaccttgaaacctttctctaacaattgaccaacacttaacaaattttggtcaatttctggaacatagagaacatcagagataagtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1542522 |
ttgtcttcaaagtgtaccttgaaacctttctctaacaattgaccaacacttaacaaattttggtcaatttctggaacatagagaacatcagagataagtt |
1542423 |
T |
|
| Q |
301 |
ttgtacccgaacaacttac |
319 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
1542422 |
ttgtacccgaacaacttac |
1542404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 26402355 - 26402037
Alignment:
| Q |
1 |
ccctcactaatttctttgattgaagcagtagtaatccttgatggtgataatgaccaagccttttgtgccacatctctgtgacactttctttgacagtaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
26402355 |
ccctcactaatttctttgattgaagcagtagtaatccttgatggtgataatgaccaagcctcttgtgccacatctctgtgacactttctttgacagtaaa |
26402256 |
T |
|
| Q |
101 |
tgcagattgcttctcctctaatggattaagtgtgaagctctttcccctcatcttgaccttgaacatctcttggccagaagcatcttttatcaggcagtgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26402255 |
tgcagattgcttctcctctaatggattaagtgtgaagctctttcccctcatcttgaccttgaacatctcttggccagaagcatcttttatcaggcagtgt |
26402156 |
T |
|
| Q |
201 |
ttgtcttcaaagtgtaccttgaaacctttctctaacaattgaccaacacttaacaaattttggtcaatttctggaacatagagaacatcagagataagtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26402155 |
ttgtcttcaaagtgtaccttgaaacctttctctaacaattgaccaacacttaacaaattttggtcaatttctggaacatagagaacatcagagataagtt |
26402056 |
T |
|
| Q |
301 |
ttgtacccgaacaacttac |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
26402055 |
ttgtacccgaacaacttac |
26402037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 18012362 - 18012292
Alignment:
| Q |
225 |
cctttctctaacaattgaccaacacttaacaaattttggtcaatttctggaacatagagaacatcagagat |
295 |
Q |
| |
|
||||| ||||| |||||||||||||||| || |||||| ||||| || || ||||| |||||||| ||||| |
|
|
| T |
18012362 |
cctttttctaataattgaccaacacttagcagattttgatcaatatcaggtacatacagaacatctgagat |
18012292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 9307572 - 9307523
Alignment:
| Q |
252 |
aacaaattttggtcaatttctggaacatagagaacatcagagataagttt |
301 |
Q |
| |
|
||||||||||| | |||||| |||||||| | |||||||||||||||||| |
|
|
| T |
9307572 |
aacaaattttgattaatttcaggaacatataaaacatcagagataagttt |
9307523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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