View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10578_high_3 (Length: 219)
Name: NF10578_high_3
Description: NF10578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10578_high_3 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 24578293 - 24578511
Alignment:
| Q |
1 |
aaaagccaaataattagaatcaaagaaaagattaacaacctccttaggtatatgtgatttattcctttcaattagatggttggctttgatagggagttcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24578293 |
aaaagccaaataattagaatcaaagaaaagattaacaacctccttaggtatatgtgatttattcctttcaattagatggttggctttgatagggagttcg |
24578392 |
T |
|
| Q |
101 |
tcatcaaatccatgttgtgaattacaagaatgagcggttttatcacaaattgtatcattatcaactccaattacatcctcaacttgatctaaaagttcaa |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24578393 |
tcatctaatccatgttgtgaattacaagaatgagcggttttatcacaaattgtatcattatcaactccaattacatcctcaacttgatctaaaagttcaa |
24578492 |
T |
|
| Q |
201 |
gaaatgcagcattcttctc |
219 |
Q |
| |
|
|||||||| || ||||||| |
|
|
| T |
24578493 |
gaaatgcatcaatcttctc |
24578511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 13076289 - 13076088
Alignment:
| Q |
6 |
ccaaataattagaatcaaagaaaagattaacaacctccttaggtatatgtgatttattcctttcaattagatggttggctttgatagggagttcgtcatc |
105 |
Q |
| |
|
|||||||| ||||||| |||||| | |||||||||| |||||||||||||||||| ||||||||| ||||||||||||| ||| ||| || ||||| | |
|
|
| T |
13076289 |
ccaaataactagaatcggagaaaacactaacaacctctttaggtatatgtgatttagtcctttcaactagatggttggctctgacaggtagcccgtcagc |
13076190 |
T |
|
| Q |
106 |
aaatccatgttgtgaattacaagaatgagcggttttatcacaaattgtatcattatcaactccaattacatcctcaacttgatctaaaagttcaagaaat |
205 |
Q |
| |
|
|| ||||| |||||||||||| ||||||| |||||||||||||| ||||||||||||||| |||||| |||| || |||||||||||||||||||| ||| |
|
|
| T |
13076189 |
aattccatcttgtgaattacaggaatgagtggttttatcacaaactgtatcattatcaacaccaattgcatcttcgacttgatctaaaagttcaagcaat |
13076090 |
T |
|
| Q |
206 |
gc |
207 |
Q |
| |
|
|| |
|
|
| T |
13076089 |
gc |
13076088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University