View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10578_high_5 (Length: 209)
Name: NF10578_high_5
Description: NF10578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10578_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 30 - 187
Target Start/End: Complemental strand, 26747661 - 26747503
Alignment:
| Q |
30 |
agaaaacttcaataattcatttttcattaataccactgtttataatgtagagaaacttcctctctagtctttggaattttcctttttagtg-ccnnnnnn |
128 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
26747661 |
agaaagcttcaatgattcatttttcattaatacccctgtttataatgtagagaaacttcctctctaatctttggaattttcctttttagtgcccaaaaaa |
26747562 |
T |
|
| Q |
129 |
nttatagaataaatcttgccttgtgtatctgtgaaaaaagtcgatagaagacagaggag |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
26747561 |
attatagaataaatcttgccttgtgtatctgtgaaagaagtcgatagaagacacaggag |
26747503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 44061510 - 44061661
Alignment:
| Q |
36 |
cttcaataattcatttttc-attaataccactgtttataatgtagagaaacttcctctctagtctttggaattttcctttttagt-gccnnnnnnnttat |
133 |
Q |
| |
|
||||||| ||||||||||| ||||| ||| |||||||||||| |||||| |||| |||||||||||||| ||||||||||||||| ||| ||| |
|
|
| T |
44061510 |
cttcaatgattcatttttccattaacacccctgtttataatggagagaagcttcttctctagtctttgggattttcctttttagtggccaaaaaaattac |
44061609 |
T |
|
| Q |
134 |
agaataaatcttgccttgtgtatctgtgaaaaaagtcgatagaagacagagg |
185 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44061610 |
agaataaagcttgccttgtgtatctgtgaaagaagtcgatagaagacagagg |
44061661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 30 - 191
Target Start/End: Original strand, 17887676 - 17887839
Alignment:
| Q |
30 |
agaaaacttcaataattcatttt-tcattaataccactgtttataatgtagagaaacttcctctctagtctttggaattttcctttttagt-gccnnnnn |
127 |
Q |
| |
|
||||| ||||||| ||||||||| ||||||||||| |||||||||||| |||||| |||| |||| ||||||| ||||| ||||||||| ||| |
|
|
| T |
17887676 |
agaaagcttcaatgattcattttttcattaatacccctgtttataatggagagaagcttcttctccgatctttgggatttttctttttagtggccaaaaa |
17887775 |
T |
|
| Q |
128 |
nnttatagaataaatcttgccttgtgtatctgtgaaaaaagtcgatagaagacagaggagaaga |
191 |
Q |
| |
|
||| |||||||| |||||||||||||||| |||| |||||||||||||||| ||||||||| |
|
|
| T |
17887776 |
aattacagaataaacattgccttgtgtatctgggaaagaagtcgatagaagacaaaggagaaga |
17887839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University