View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10578_low_1 (Length: 1018)

Name: NF10578_low_1
Description: NF10578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10578_low_1
NF10578_low_1
[»] chr5 (15 HSPs)
chr5 (18-802)||(39675407-39676209)
chr5 (228-436)||(10866218-10866426)
chr5 (228-436)||(10873879-10874087)
chr5 (228-436)||(10878950-10879158)
chr5 (228-436)||(10884021-10884229)
chr5 (222-447)||(10887942-10888167)
chr5 (245-445)||(10045775-10045975)
chr5 (21-161)||(10866502-10866642)
chr5 (21-161)||(10873663-10873803)
chr5 (21-161)||(10878734-10878874)
chr5 (21-161)||(10883805-10883945)
chr5 (21-161)||(10887723-10887863)
chr5 (825-916)||(39675263-39675353)
chr5 (21-145)||(10046138-10046262)
chr5 (750-803)||(10865768-10865823)


Alignment Details
Target: chr5 (Bit Score: 719; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 719; E-Value: 0
Query Start/End: Original strand, 18 - 802
Target Start/End: Complemental strand, 39676209 - 39675407
Alignment:
Q  18 ccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatggaattgatccagacacca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39676209 ccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatggaattgatccagacacca 39676110  T
Q  118 ctgcaccaacaacctcctcatcttccatcgacaaaactttttggacaaggatttcctccggtagatttggcatgactttggtggttttcgcagcaatgtc 217  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39676109 ctgcaccaacaacctcctcatcttccatggacaaaactttttggacaaggatttcctccggtagatttggcatgactttggtggttttcgcagcaatgtc 39676010  T
Q  218 agcaacttcatcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaaga 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39676009 agcaacttcatcttcttcttcatcgtaatgaaggatgaaggcaacgccaaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaaga 39675910  T
Q  318 atctcggagattgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaaga 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39675909 atctcggagattgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaaga 39675810  T
Q  418 aaaaagtgtttgttaagtaaagtgaagaagtttgtgacagtgaattctgctgcttttggttcttctttgttttgctggagggatcagaatatatttggcg 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39675809 aaaaagtgtttgttaagtaaagtgaagaagtttgtgacagtgaattctgctgcttttggttcttctttgttttgctggagggatcagaatatatttggcg 39675710  T
Q  518 ttgaacttccatttctctcttgttaagtgaaggatttgaaatccagaaaatgaaaagaaagaaaggagttcagggagattgattggtaatttgtttgaaa 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39675709 ttgaacttccatttctctcttgttaagtgaaggatttgaaatccagaaaatgaaaagaaagaaaggagttcagggagattgattggtaattggtttgaaa 39675610  T
Q  618 cttgaaaaagaaagccaagatttagaatgttatttatagacagacaaagaataagagag----------------tgaggaagtttcatagttacatcgt 701  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||| |||||    
T  39675609 cttgaaaaagaaagccaagatttagaatgttatttatagacagacaaagaataagagagtgagtgagagtgagagtgaggaagtttcatagttagatcgt 39675510  T
Q  702 aattaactcgtgcacaacgagggaatattgtagtaatgtcaagataatatattttgtggagatgctaacat--cacatcatcacaagaagcctttacttg 799  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  39675509 aattaactcgtgaacaacgagggaatattgtagtaatgtcaagataatatattttgtggagatgctaacatcacacatcatcacaagaagcctttacttg 39675410  T
Q  800 act 802  Q
    |||    
T  39675409 act 39675407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 228 - 436
Target Start/End: Complemental strand, 10866426 - 10866218
Alignment:
Q  228 tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga 327  Q
    |||||||||||||||||||||||||||||||||| |||||||||||   ||||||||| || | |||| ||||||||||| ||||| |||||||| ||||    
T  10866426 tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga 10866327  T
Q  328 ttgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtt 427  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| |   ||    
T  10866326 ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt 10866227  T
Q  428 tgttaagta 436  Q
    |||||||||    
T  10866226 tgttaagta 10866218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 228 - 436
Target Start/End: Original strand, 10873879 - 10874087
Alignment:
Q  228 tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga 327  Q
    |||||||||||||||||||||||||||||||||| |||||||||||   ||||||||| || | |||| ||||||||||| ||||| |||||||| ||||    
T  10873879 tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga 10873978  T
Q  328 ttgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtt 427  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| |   ||    
T  10873979 ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt 10874078  T
Q  428 tgttaagta 436  Q
    |||||||||    
T  10874079 tgttaagta 10874087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 228 - 436
Target Start/End: Original strand, 10878950 - 10879158
Alignment:
Q  228 tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga 327  Q
    |||||||||||||||||||||||||||||||||| |||||||||||   ||||||||| || | |||| ||||||||||| ||||| |||||||| ||||    
T  10878950 tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga 10879049  T
Q  328 ttgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtt 427  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| |   ||    
T  10879050 ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt 10879149  T
Q  428 tgttaagta 436  Q
    |||||||||    
T  10879150 tgttaagta 10879158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 228 - 436
Target Start/End: Original strand, 10884021 - 10884229
Alignment:
Q  228 tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga 327  Q
    |||||||||||||||||||||||||||||||||| |||||||||||   ||||||||| || | |||| ||||||||||| ||||| |||||||| ||||    
T  10884021 tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga 10884120  T
Q  328 ttgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtt 427  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| |   ||    
T  10884121 ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt 10884220  T
Q  428 tgttaagta 436  Q
    |||||||||    
T  10884221 tgttaagta 10884229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 222 - 447
Target Start/End: Original strand, 10887942 - 10888167
Alignment:
Q  222 acttcatcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatct 321  Q
    ||||| ||||| || ||||||||||||| ||||||||||  ||||||||||||  |||||||||  | | |||| ||||||||||||| ||||| |||||    
T  10887942 acttcgtcttcatcatcatcgtaatgaatgatgaaggcagtgccgaagaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatct 10888041  T
Q  322 cggagattgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaa 421  Q
    | |||| ||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||| |||||||     
T  10888042 cagagactgtgaggatgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaac 10888141  T
Q  422 agtgtttgttaagtaaagtgaagaag 447  Q
    || ||||||||| || ||||||||||    
T  10888142 agcgtttgttaaatacagtgaagaag 10888167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 245 - 445
Target Start/End: Complemental strand, 10045975 - 10045775
Alignment:
Q  245 atgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggagattgtgaggacatggaga 344  Q
    |||||| |||||| ||| ||||||||||||| ||||||| |||| | |||| ||||||||||| | | |   |||||| ||||||||||| ||||| |||    
T  10045975 atgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaaga 10045876  T
Q  345 ggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagtaaagtgaag 444  Q
    ||||| |||||||||||||| |||||||||| || ||||||||| || |||||||||||||| |||||||||||||  | |||||||||||| |||||||    
T  10045875 ggtgtggaggttcggatcttctcacgccacctgtgaagaagaaaatacgcgacggagaagaaaagaccgaagaaaattgcgtttgttaagtagagtgaag 10045776  T
Q  445 a 445  Q
    |    
T  10045775 a 10045775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 21 - 161
Target Start/End: Complemental strand, 10866642 - 10866502
Alignment:
Q  21 gtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatggaattgatccagacaccactg 120  Q
    |||||||||||||| ||||||||||||||    || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  10866642 gtaactctctccaccgcttggttcctaatatttgctgcacgtcggcaatctccaagcttggattcaagcgagtaagatggaattgatcctgacaccactg 10866543  T
Q  121 caccaacaacctcctcatcttccatcgacaaaactttttgg 161  Q
    |||  ||||||||||| |||||||| |||| ||||||||||    
T  10866542 cactgacaacctcctcgtcttccatggacataactttttgg 10866502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 10873663 - 10873803
Alignment:
Q  21 gtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatggaattgatccagacaccactg 120  Q
    |||||||||||||| ||||||||||||||    || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  10873663 gtaactctctccacggcttggttcctaatatttgctgcacgtcggcaatctccaagcttggattcaagcgagtaagatggaattgatcctgacaccactg 10873762  T
Q  121 caccaacaacctcctcatcttccatcgacaaaactttttgg 161  Q
    |||  ||||||||||| |||||||| |||| ||||||||||    
T  10873763 cactgacaacctcctcgtcttccatggacataactttttgg 10873803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 10878734 - 10878874
Alignment:
Q  21 gtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatggaattgatccagacaccactg 120  Q
    |||||||||||||| ||||||||||||||    || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  10878734 gtaactctctccacggcttggttcctaatatttgctgcacgtcggcaatctccaagcttggattcaagcgagtaagatggaattgatcctgacaccactg 10878833  T
Q  121 caccaacaacctcctcatcttccatcgacaaaactttttgg 161  Q
    |||  ||||||||||| |||||||| |||| ||||||||||    
T  10878834 cactgacaacctcctcgtcttccatggacataactttttgg 10878874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 10883805 - 10883945
Alignment:
Q  21 gtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatggaattgatccagacaccactg 120  Q
    |||||||||||||| ||||||||||||||    || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  10883805 gtaactctctccacggcttggttcctaatatttgctgcacgtcggcaatctccaagcttggattcaagcgagtaagatggaattgatcctgacaccactg 10883904  T
Q  121 caccaacaacctcctcatcttccatcgacaaaactttttgg 161  Q
    |||  ||||||||||| |||||||| |||| ||||||||||    
T  10883905 cactgacaacctcctcgtcttccatggacataactttttgg 10883945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 10887723 - 10887863
Alignment:
Q  21 gtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatggaattgatccagacaccactg 120  Q
    ||||| |||||||| |||||||||||||||   || ||||| ||||||||||| |||||||| ||||| |||||||| ||||||||||| || |||||||    
T  10887723 gtaaccctctccactgcttggttcctaatctttgctgcacgacggcaatctccgagcttcgactcaagggagtaagaaggaattgatcccgataccactg 10887822  T
Q  121 caccaacaacctcctcatcttccatcgacaaaactttttgg 161  Q
    |||| |||||||| || |||||||| |||| ||||||||||    
T  10887823 caccgacaacctcttcgtcttccatggacataactttttgg 10887863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 825 - 916
Target Start/End: Complemental strand, 39675353 - 39675263
Alignment:
Q  825 tgtgcacagactaattaagttttaaaaaactagtgttattnnnnnnnncaaatttgaaagaaacaaagttttaaataattcgttgaacgtaa 916  Q
    |||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||| ||||||||||    
T  39675353 tgtgcacagactaattaagttttaaaaaactagtgttat-aaaaaaaacaaatttgaaagaaacaaagttttaaataattcattgaacgtaa 39675263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 10046262 - 10046138
Alignment:
Q  21 gtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatggaattgatccagacaccactg 120  Q
    |||||||||||||| |||||||| |  ||| | || ||||||  ||||||||| || || |||||||||||||| || |||||||  || |  ||||| |    
T  10046262 gtaactctctccaccgcttggttacgtatcgccgccgcacgtttgcaatctccgagttttgattcaagcgagtatgacggaattgtaccggttaccaccg 10046163  T
Q  121 caccaacaacctcctcatcttccat 145  Q
    |||  |||||||| |||||||||||    
T  10046162 cacggacaacctcgtcatcttccat 10046138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 750 - 803
Target Start/End: Complemental strand, 10865823 - 10865768
Alignment:
Q  750 atattttgtggaga--tgctaacatcacatcatcacaagaagcctttacttgacta 803  Q
    ||||||||||||||  ||||||||| |||||||||| ||||||||||| |||||||    
T  10865823 atattttgtggagagatgctaacattacatcatcactagaagcctttatttgacta 10865768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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