View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10578_low_10 (Length: 246)
Name: NF10578_low_10
Description: NF10578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10578_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 5391206 - 5390979
Alignment:
| Q |
1 |
tcattggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaagctgcatgggaatgttattcaacagc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5391206 |
tcattggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaaggtgcatgggaatgttattcaacagc |
5391107 |
T |
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| Q |
101 |
ttcagatgctaatttaatatccgaacaacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391106 |
ttcagatgctaatttaatatccgaacaacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcagg |
5391007 |
T |
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| Q |
201 |
tggaaacatttgtggaaggtgttagcag |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
5391006 |
tggaaacatttgtggaaggtgttagcag |
5390979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 5399925 - 5399698
Alignment:
| Q |
1 |
tcattggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaagctgcatgggaatgttattcaacagc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5399925 |
tcattggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaaggtgcatgggaatgttattcaacagc |
5399826 |
T |
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| Q |
101 |
ttcagatgctaatttaatatccgaacaacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5399825 |
ttcagatgctaatttaatatccgaacaacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcagg |
5399726 |
T |
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| Q |
201 |
tggaaacatttgtggaaggtgttagcag |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
5399725 |
tggaaacatttgtggaaggtgttagcag |
5399698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 5394744 - 5394517
Alignment:
| Q |
1 |
tcattggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaagctgcatgggaatgttattcaacagc |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| || || |
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| T |
5394744 |
tcattggcacgctttgtgtttacgccgcaatttgcaagcatgagggtcttcctttaaggtttcctggctcaaaaggtgcatgggagtgttattctactgc |
5394645 |
T |
|
| Q |
101 |
ttcagatgctaatttaatatccgaacaacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcagg |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||| ||||| |||||||||| | |
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| T |
5394644 |
ttcagatgctaatttaatagccgaacaacatatttggggtgcagcggatcctaacgcaaagaatgaagcattcaattgcagtaatggtgatgttttcaag |
5394545 |
T |
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| Q |
201 |
tggaaacatttgtggaaggtgttagcag |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
5394544 |
tggaaacatttgtggaaggtgttagcag |
5394517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 123 - 220
Target Start/End: Complemental strand, 3818947 - 3818850
Alignment:
| Q |
123 |
gaacaacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggt |
220 |
Q |
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|||||||||||||||| ||||||||||||| |||| ||||||||||||||||| || || ||||| |||||||| |||||||| || ||||||||||| |
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| T |
3818947 |
gaacaacatatttgggctgcagtggatccttatgctaagaatgaagcattcaattgtagtaatggtgatgtttttaggtggaagcaattgtggaaggt |
3818850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 220
Target Start/End: Original strand, 47338933 - 47339027
Alignment:
| Q |
126 |
caacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggt |
220 |
Q |
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||||||||||||| ||||||||||||| |||| ||||||||||||||||| || || ||||| |||||||| |||||||| || ||||||||||| |
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| T |
47338933 |
caacatatttgggctgcagtggatccttatgctaagaatgaagcattcaattgtagtaatggtgatgtttttaggtggaagcaattgtggaaggt |
47339027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 126 - 220
Target Start/End: Original strand, 47349942 - 47350036
Alignment:
| Q |
126 |
caacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggt |
220 |
Q |
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||||| ||||||| |||||||||| || |||| ||||||||||| ||||| || |||||||| |||||||| ||||||||||| ||||||||||| |
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| T |
47349942 |
caacacatttgggctgcagtggatacttatgctaagaatgaagcgttcaattgtagcaatggtgatgtttttaggtggaaacaattgtggaaggt |
47350036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 47347403 - 47347485
Alignment:
| Q |
126 |
caacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaaca |
208 |
Q |
| |
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||||||||||||| |||||||||||| |||| ||||| ||||| || ||||| |||||||| |||||||| || |||||||| |
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| T |
47347403 |
caacatatttgggccgcagtggatccttatgctaagaacgaagcttttaactgtagcaatggtgatgtttttagatggaaaca |
47347485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 3819057 - 3819006
Alignment:
| Q |
13 |
tttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcc |
64 |
Q |
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|||||||||||||||||||||| |||||||||||| |||| || || ||||| |
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| T |
3819057 |
tttgtgtttacgctgcaatttgtaagcatgagggtgttccgttgagatttcc |
3819006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 47338820 - 47338859
Alignment:
| Q |
13 |
tttgtgtttacgctgcaatttgcaagcatgagggtcttcc |
52 |
Q |
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|||||||||||||||||||||| |||||||||||| |||| |
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| T |
47338820 |
tttgtgtttacgctgcaatttgtaagcatgagggtgttcc |
47338859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 47349820 - 47349859
Alignment:
| Q |
4 |
ttggcacgctttgtgtttacgctgcaatttgcaagcatga |
43 |
Q |
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| T |
47349820 |
ttggcacgctttgcctttacgctgcaatttgcaagcatga |
47349859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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