View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10578_low_11 (Length: 243)
Name: NF10578_low_11
Description: NF10578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10578_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 2797229 - 2797451
Alignment:
| Q |
4 |
gcttagtcaactgttctctcttagtgaagaattcaaatatgtaacagtaaggcaagatgaaaagatagagctagcaaagcttttggatcgtgttcccatt |
103 |
Q |
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| T |
2797229 |
gcttagtcaactgttctctcttagtgaagaattcaaatatgtaacagtaaggcaagatgaaaagatagagctagcaaagcttttggatcgtgttcccatt |
2797328 |
T |
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| Q |
104 |
cccgtgaaggaaagtctggaggatccaagtgccaagataaatgttttactgcaatcatacatttcacaattaaagctcgaaggactctcattgacatctg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2797329 |
cccgtgaaggaaagtctggaggatccaagtgccaagataaatgttttactgcaatcatacatttcacaattaaagctcgaaggactctcattgacatctg |
2797428 |
T |
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| Q |
204 |
acatggttttcataacccaggtt |
226 |
Q |
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||||||||||||||||||||||| |
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| T |
2797429 |
acatggttttcataacccaggtt |
2797451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 29 - 226
Target Start/End: Original strand, 29266282 - 29266479
Alignment:
| Q |
29 |
gaagaattcaaatatgtaacagtaaggcaagatgaaaagatagagctagcaaagcttttggatcgtgttcccattcccgtgaaggaaagtctggaggatc |
128 |
Q |
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| T |
29266282 |
gaagaattcaagtatgttacagtaaggcaggatgagaagatggagctagcaaagctcttggatcgtgttcccatccccatcaaggaaagtttggaagagc |
29266381 |
T |
|
| Q |
129 |
caagtgccaagataaatgttttactgcaatcatacatttcacaattaaagctcgaaggactctcattgacatctgacatggttttcataacccaggtt |
226 |
Q |
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| T |
29266382 |
caagtgccaaaatcaatgttttactgcaagcatacatttcacaattaaagcttgaagggctctcaatgacatccgatatggtttttataacccaggtt |
29266479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 213
Target Start/End: Complemental strand, 29187040 - 29186831
Alignment:
| Q |
4 |
gcttagtcaactgttctctcttagtgaagaattcaaatatgtaacagtaaggcaagatgaaaagatagagctagcaaagcttttggatcgtgttcccatt |
103 |
Q |
| |
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|||| ||||| ||||||| |||||||| ||||| || |||||||||||| | ||||||| ||| | |||||| | ||||||| | | ||||| ||| |
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| T |
29187040 |
gctttgtcaattgttctcacttagtgaggaattaaagcatgtaacagtaaaggaagatgagaagctgcagctagaagagctttttaaccatgttcatatt |
29186941 |
T |
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| Q |
104 |
cccgtgaaggaaagtctggaggatccaagtgccaagataaatgttttactgcaatcatacatttcacaattaaagctcgaaggactctcattgacatctg |
203 |
Q |
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||| | || ||||| ||||| || |||| ||| || ||||||||||||||||| ||||||||||||| |||||| ||||| |||||| ||||||||| |
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| T |
29186940 |
cccatcaaagaaagcctggaagagccaactgcaaaagtaaatgttttactgcaagcatacatttcacagacaaagcttgaagggctctcaatgacatctg |
29186841 |
T |
|
| Q |
204 |
acatggtttt |
213 |
Q |
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| |||||||| |
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| T |
29186840 |
atatggtttt |
29186831 |
T |
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