View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10578_low_12 (Length: 239)
Name: NF10578_low_12
Description: NF10578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10578_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 30384466 - 30384244
Alignment:
| Q |
1 |
tacatcatcaagactcattcccacatccttgttgttttcattttcgtcaatttccttgcgatttgactcaagaagaatgctcaataagtcattcctactg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30384466 |
tacatcatcaagactcattcccacatccttgttgttttcattttcgtcaatttccttgcgatttgactcaagaagaatgctcaataagtcattcctagtg |
30384367 |
T |
|
| Q |
101 |
ggctcacctgcctttaatgctttctccctcttgttaatcatatctttaagcgaagaggttatttctttgtcgattttattcatccttctatggacaattg |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30384366 |
ggctcacctgcctttaatgctttttccctcttgttaatcatatctttaagcgaagaggttatttctttgtcgattttattcatctttctatggacaattg |
30384267 |
T |
|
| Q |
201 |
taggtaaaaacctacaaacaaaa |
223 |
Q |
| |
|
|||| |||||||||||||||||| |
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| T |
30384266 |
taggcaaaaacctacaaacaaaa |
30384244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 30394900 - 30394678
Alignment:
| Q |
1 |
tacatcatcaagactcattcccacatccttgttgttttcattttcgtcaatttccttgcgatttgactcaagaagaatgctcaataagtcattcctactg |
100 |
Q |
| |
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||||| ||||||||||||||| ||| ||| ||||| | || | ||||||||||| ||||||| ||||||||||| ||||||||||||||| || || |
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| T |
30394900 |
tacatgatcaagactcattccaacactcttattgttgttgttattttcaatttccttatgatttgattcaagaagaatactcaataagtcattcttagtg |
30394801 |
T |
|
| Q |
101 |
ggctcacctgcctttaatgctttctccctcttgttaatcatatctttaagcgaagaggttatttctttgtcgattttattcatccttctatggacaattg |
200 |
Q |
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| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| | ||||| |||| | |
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| T |
30394800 |
gattcaccagcctttaattctttctccctcttgttaatcatatctttaagcgaagaggttatttctttgtcaatttcattcatcttcctatgcacaaata |
30394701 |
T |
|
| Q |
201 |
taggtaaaaacctacaaacaaaa |
223 |
Q |
| |
|
|||| | |||||||| ||||||| |
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| T |
30394700 |
taggcagaaacctacgaacaaaa |
30394678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 30483895 - 30483752
Alignment:
| Q |
1 |
tacatcatcaagactcattcccacatccttgttgttttcattttcgtcaatttccttgcgatttgactcaagaagaatgctcaataagtcattcctactg |
100 |
Q |
| |
|
||||||||||||| ||||||| |||| ||| ||||| | || || | |||||||||| ||||||||||||||||||| | |||||||||||| || || |
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| T |
30483895 |
tacatcatcaagattcattccaacattcttattgttgttgttatctttaatttccttgtgatttgactcaagaagaatacctaataagtcattcttagtg |
30483796 |
T |
|
| Q |
101 |
ggctcacctgcctttaatgctttctccctcttgttaatcatatc |
144 |
Q |
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| ||||||||||||| | || | || ||||||||||| ||||| |
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| T |
30483795 |
gcttcacctgcctttatttctctttctctcttgttaataatatc |
30483752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 30424873 - 30424721
Alignment:
| Q |
1 |
tacatcatcaagactcattcccacatccttgttgttttcattttcgtcaatttccttgcgatttgactcaagaagaatgctcaataagtcattcctactg |
100 |
Q |
| |
|
||||||||||||||||||||| |||| ||| ||||| | | ||| || ||||| ||| |||||||||| | ||| || | |||||||||| | || || |
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| T |
30424873 |
tacatcatcaagactcattccaacattcttattgttgccgtgttcttccatttctttgtgatttgactctaaaagtatacctaataagtcatccttagtg |
30424774 |
T |
|
| Q |
101 |
ggctcacctgcctttaatgctttctccctcttgttaatcatatctttaagcga |
153 |
Q |
| |
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| ||||||||||||| |||| | || |||||||||||||||||| ||||||| |
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| T |
30424773 |
gcttcacctgcctttagtgctctttctctcttgttaatcatatctgtaagcga |
30424721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 155
Target Start/End: Complemental strand, 30468971 - 30468818
Alignment:
| Q |
2 |
acatcatcaagactcattcccacatccttgttgttttcattttcgtcaatttccttgcgatttgactcaagaagaatgctcaataagtcattcctactgg |
101 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| ||| ||| || ||||| ||| |||||||||| | ||| || | || || |||| | || | | |
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| T |
30468971 |
acatcatcaagactcattccgacatccttattgttgccatgttcttccatttctttgtgatttgactctaaaagtatacctaacaaatcatccttagttg |
30468872 |
T |
|
| Q |
102 |
gctcacctgcctttaatgctttctccctcttgttaatcatatctttaagcgaag |
155 |
Q |
| |
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||||||||||||| |||| | || || ||||||||||||||| ||||||||| |
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| T |
30468871 |
cttcacctgcctttagtgctctttctctgttgttaatcatatctgtaagcgaag |
30468818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 23768092 - 23768032
Alignment:
| Q |
83 |
aataagtcattcctactgggctcacctgcctttaatgctttctccctcttgttaatcatat |
143 |
Q |
| |
|
|||||||||||| | ||| ||||||||||||| ||||||||||||||||||||| |||| |
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| T |
23768092 |
aataagtcattctcagtggcttcacctgcctttattgctttctccctcttgttaattatat |
23768032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 30437161 - 30437007
Alignment:
| Q |
1 |
tacatcatcaagactcattcccacatccttgttgttttcattttcgtcaatttccttgcgatttgactcaagaagaatgctcaataagtcattcctactg |
100 |
Q |
| |
|
|||||| |||||||||||||| |||| ||| ||||| |||| ||| || ||||| ||| |||||||||| | ||| || | || || |||| | | | |
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| T |
30437161 |
tacatcgtcaagactcattccaacattcttattgttgtcatgttcttccatttctttgtgatttgactctaaaagtatacctaacaaatcatcctttgtt |
30437062 |
T |
|
| Q |
101 |
ggctcacctgcctttaatgctttctccctcttgttaatcatatctttaagcgaag |
155 |
Q |
| |
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| ||||||||| ||| |||| |||| ||| |||||||||||||| ||||||||| |
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|
| T |
30437061 |
gcttcacctgccattagtgctctctctctcgtgttaatcatatctgtaagcgaag |
30437007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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