View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10578_low_13 (Length: 238)
Name: NF10578_low_13
Description: NF10578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10578_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 934578 - 934809
Alignment:
| Q |
1 |
tctttatcatactcaatgtaagcaac---aatatccaaactattctagcatgtgcctaatattttagttcctttttattatttcataaataaatgctaaa |
97 |
Q |
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| T |
934578 |
tctttatcgtactcaatgtaagcaacaacaatatccaaactattctagcatgtgcctaatattttagttcatttttattatttcataaataaatgctaaa |
934677 |
T |
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| Q |
98 |
tatgatgtgtgtatatgttgtattgcagcttgcacttgtagcaacccatgctgccttaccccctgaagtgtactggaagtccaaacttccaacaactcaa |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
934678 |
tatgatgtgtgtatatgttgtattgcagcttgcacttgtagcaacccatgctgccttaccccctgaagtgtactggaagtccaaacttcccacaactcaa |
934777 |
T |
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| Q |
198 |
atgccaaaagccatcacagatctccttcatct |
229 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
934778 |
atgccaaaagccatcacagatctccttcatct |
934809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 112 - 226
Target Start/End: Original strand, 901015 - 901129
Alignment:
| Q |
112 |
atgttgtattgcagcttgcacttgtagcaacccatgctgccttaccccctgaagtgtactggaagtccaaacttccaacaactcaaatgccaaaagccat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
901015 |
atgttgtattgcagcttgcacttgtagcaacccatgctgcattaccccctgaattgtactggaggtccaaacttccaacaactcaaatgccaaaagccat |
901114 |
T |
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| Q |
212 |
cacagatctccttca |
226 |
Q |
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|| |||||| ||||| |
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| T |
901115 |
catagatcttcttca |
901129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 110 - 226
Target Start/End: Original strand, 915410 - 915526
Alignment:
| Q |
110 |
atatgttgtattgcagcttgcacttgtagcaacccatgctgccttaccccctgaagtgtactggaagtccaaacttccaacaactcaaatgccaaaagcc |
209 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||| |||||| |||| ||||||||||||||||| ||||||||||| ||||||||| |
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| T |
915410 |
atatgttgtattgcagcttgcactggtggcaacccatgctgccttaccacctgaattgtattggaagtccaaacttcccacaactcaaattccaaaagcc |
915509 |
T |
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| Q |
210 |
atcacagatctccttca |
226 |
Q |
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||||||||| ||||||| |
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| T |
915510 |
atcacagatatccttca |
915526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 112 - 226
Target Start/End: Original strand, 923471 - 923585
Alignment:
| Q |
112 |
atgttgtattgcagcttgcacttgtagcaacccatgctgccttaccccctgaagtgtactggaagtccaaacttccaacaactcaaatgccaaaagccat |
211 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||||||| |||||| |||| ||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
923471 |
atgttgtattgcagcttgcacttgtggcaactcatgctgccttaccacctgaattgtattggaagtccaaacttcccacaactcaaattccaaaagccat |
923570 |
T |
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| Q |
212 |
cacagatctccttca |
226 |
Q |
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||||||| ||||||| |
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| T |
923571 |
cacagatatccttca |
923585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 112 - 226
Target Start/End: Original strand, 908877 - 908991
Alignment:
| Q |
112 |
atgttgtattgcagcttgcacttgtagcaacccatgctgccttaccccctgaagtgtactggaagtccaaacttccaacaactcaaatgccaaaagccat |
211 |
Q |
| |
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|||||||||||||||||||||| || |||||||||||| ||||||| |||||| |||| ||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
908877 |
atgttgtattgcagcttgcactggtggcaacccatgctaccttaccacctgaattgtattggaagtccaaacttcccacaactcaaattccaaaagccat |
908976 |
T |
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| Q |
212 |
cacagatctccttca |
226 |
Q |
| |
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||||||| ||||||| |
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| T |
908977 |
cacagatatccttca |
908991 |
T |
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