View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10578_low_14 (Length: 237)
Name: NF10578_low_14
Description: NF10578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10578_low_14 |
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| [»] chr4 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 55 - 237
Target Start/End: Original strand, 40274507 - 40274689
Alignment:
| Q |
55 |
caaagttatatttaatgtgatggttcaagaaaatttagatattaggaaaactaaaaaatttggagagttatggaggggtttgattgtttgtttgtgtgag |
154 |
Q |
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| T |
40274507 |
caaagttatatttaatgtgatggttcaagaaaatttagatattaggaaaactaaaaaatttggagagttatggaggggtttgattgtttgtttgtgtgag |
40274606 |
T |
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| Q |
155 |
agagaagaatcatagataaccattacattcatgagtcaaacgcccacttaccccttgcatctaatctcccccctcgttggcct |
237 |
Q |
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| T |
40274607 |
agagaataatcatatataaccattacatttatgagtcaaacgctcacttaccccttgcatgtaatctccctcctcgttggcct |
40274689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 144
Target Start/End: Complemental strand, 40273727 - 40273638
Alignment:
| Q |
55 |
caaagttatatttaatgtgatggttcaagaaaatttagatattaggaaaactaaaaaatttggagagttatggaggggtttgattgtttg |
144 |
Q |
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| T |
40273727 |
caaagttgtactaaatgtcatggttcaagaaaatttagatcttgggtaaattaaaaaactcgaagagttagggagggttttgattgtttg |
40273638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 40274453 - 40274487
Alignment:
| Q |
1 |
ttgtatggctgtcaaagaagacgatgcatattgtc |
35 |
Q |
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| T |
40274453 |
ttgtatggctgtcaaagaagacgatgcatattgtc |
40274487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 26706910 - 26706972
Alignment:
| Q |
175 |
cattacattcatgagtcaaacgcccacttaccccttgcatctaatctcccccctcgttggcct |
237 |
Q |
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| T |
26706910 |
cattacaatcatgagtcaaatggtcgcttaccccttacatctaatctctcccttcgttggcct |
26706972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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