View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10578_low_15 (Length: 237)
Name: NF10578_low_15
Description: NF10578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10578_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 18940596 - 18940385
Alignment:
| Q |
14 |
attattttctctcatgattgnnnnnnnngattccaataatatagttttaatctcatgannnnnnnctcaagaatgtaatataagtcatgaagctagataa |
113 |
Q |
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| T |
18940596 |
attattttctctcatgattgtttcttttgattccaataatatagttttaatctcatgatttttttctcaagaatgtaatataagtcatgaagctagataa |
18940497 |
T |
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| Q |
114 |
ctcagttgaaaaagaaccgaaggatgaagttctttcgccgagattcgtgccgaaagtctcgaaggttcttcgatcctaaaatgttcccatgatgagtgtt |
213 |
Q |
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| T |
18940496 |
ctcagttgaaaaagaaccgaaggatgaagttctttcgccgagattcgtgctaaaagtctcgaaggttcttcgatcctaaaatgttcccatgatgagtgtt |
18940397 |
T |
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| Q |
214 |
attggtctcctt |
225 |
Q |
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|||||||||||| |
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| T |
18940396 |
attggtctcctt |
18940385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 183
Target Start/End: Original strand, 19897651 - 19897753
Alignment:
| Q |
81 |
caagaatgtaatataagtcatgaagctagataactcagttgaaaaagaaccgaaggatgaagttctttcgccgagattcgtgccgaaagtctcgaaggtt |
180 |
Q |
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|||||||||||| ||||| |||||||| || ||| || ||||||||||| | |||||| ||||| | |||||| ||| |||| ||||||||| |||||| |
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| T |
19897651 |
caagaatgtaatgtaagttatgaagctcgagaacccaattgaaaaagaatcaaaggataaagttttaccgccgaaatttgtgctgaaagtctcaaaggtt |
19897750 |
T |
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| Q |
181 |
ctt |
183 |
Q |
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||| |
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| T |
19897751 |
ctt |
19897753 |
T |
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