View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10578_low_2 (Length: 492)
Name: NF10578_low_2
Description: NF10578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10578_low_2 |
 | |
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| [»] scaffold0217 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 16 - 483
Target Start/End: Original strand, 9145055 - 9145526
Alignment:
| Q |
16 |
agaattgaagagtgattgttgtgcgcttttactaccaattgttttgcagactgatgtgagtgaggtggacttgacaacttcacgcctctctaagatacaa |
115 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9145055 |
agaattggagagtgattgttgtgcgcttttactaccaattgttttgcaggctgatgtgagtgaggtggacttgacaacttcacgcctctctaagatacaa |
9145154 |
T |
|
| Q |
116 |
tgttgttattgtttacaattatttgacatcaagagaccaatctctacataataatc----atacttccatcttttggcacaaggatgttcctttaaaagt |
211 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9145155 |
tgttgctattgtttacaattatttgacatcaagagaccaatctctacataataatcaatcatacttccatcttttggcacaaggatgttcctttaaaagt |
9145254 |
T |
|
| Q |
212 |
caacatttttgtttggcatttattatgtaaccgccttccaacaaccaacaacttacttaggagaagggtaatccaacaaaatgcattgttgtgctcaggc |
311 |
Q |
| |
|
||||||||| | ||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
9145255 |
caacattttcgcttggcatttattatgtaacagccttctaacaaccaacaacttactcaggagaagggtaatccaacaaaatgcattattgtgctcaggt |
9145354 |
T |
|
| Q |
312 |
ggctgtggctatgcagaggatattgaccatctattcttgcaccgtgaattttttgatcaaatttgatacgatatttatacttggctcgggtttgtcttag |
411 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||| | ||||||||||||||||||||||||||| |
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|
| T |
9145355 |
ggctgtggctatgcagaggatatcgaccatctattcttgcaccgcgaattttttggtcaaatttgatacggtgtttatacttggctcgggtttgtcttag |
9145454 |
T |
|
| Q |
412 |
tgaagccagctaatgttcatgaccacatcattactcggatcgttgggtagcttctctaaatccatttcttct |
483 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9145455 |
tcaagccagctaatgttcatgaccacatcattactcggatcgttgggtagcttctctaaatccatttcttct |
9145526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 10725409 - 10725143
Alignment:
| Q |
16 |
agaattgaagagtgattgttgtgcgcttttactaccaattgttttgcagactgatgtgagtg--aggtggacttgacaacttcacgcctctctaagatac |
113 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||| |||||||||||||| | |||||| || | ||||||||| |||||||| | |||| ||| |||| |
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|
| T |
10725409 |
agaattgaggagtgaatgttgtgcgcttttactaacaattgttttgcaggataatgtgaatgacaagtggacttggcaacttcatgtctctttaaaatac |
10725310 |
T |
|
| Q |
114 |
aatgttgttattgtttacaattatttgacatcaagagaccaatctctacataataatcatacttccatcttttggcacaaggatgttcctttaaaagtca |
213 |
Q |
| |
|
||||||| || ||||||||| | | ||||||||||| ||| || | | ||| |||||| ||| || ||||||| ||||| |||||| ||||||||| |
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|
| T |
10725309 |
aatgttgctagtgtttacaacttcctaacatcaagagatcaaactttcaacaattatcatatttcaattatttggcataaggaggttcctctaaaagtca |
10725210 |
T |
|
| Q |
214 |
acatttttgtttggcatttattatgtaaccgccttccaacaaccaacaacttacttaggagaagggt |
280 |
Q |
| |
|
||||||| | ||| | |||||| |||| || ||||||||||| |||||||| | || |||||||| |
|
|
| T |
10725209 |
acattttcgcttgccgtttattgcgtaatcgacttccaacaacatacaacttaatcagaagaagggt |
10725143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 148
Target Start/End: Original strand, 27000727 - 27000845
Alignment:
| Q |
32 |
tgttgtgcgcttttactaccaattgttttgcagactgatgtgagtga--ggtggacttgacaacttcacgcctctctaagatacaatgttgttattgttt |
129 |
Q |
| |
|
||||||| ||||||| |||| ||||||||||| ||||| ||| ||| | |||| |||||||||||| |||||| || |||||||||| || ||||| |
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|
| T |
27000727 |
tgttgtgagcttttattaccgattgttttgcacgctgatatgaatgaaagatggatttgacaacttcatgcctcttcaaaatacaatgttactagtgttt |
27000826 |
T |
|
| Q |
130 |
acaattatttgacatcaag |
148 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
27000827 |
acaattttttgacatcaag |
27000845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 9493204 - 9493301
Alignment:
| Q |
25 |
gagtgattgttgtgcgcttttactaccaattgttttgcagactgatgtgagtg--aggtggacttgacaacttcacgcctctctaagatacaatgttg |
120 |
Q |
| |
|
|||||| |||||||| || |||||||||||||||||||| || |||||| || | ||| ||||| |||||||| |||||| ||||||||||||||| |
|
|
| T |
9493204 |
gagtgaatgttgtgcactcttactaccaattgttttgcacgctaatgtgaatgacaagtgaacttggcaacttcatgcctctttaagatacaatgttg |
9493301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 1680231 - 1680302
Alignment:
| Q |
184 |
tttggcacaaggatgttcctttaaaagtcaacatttttgtttggcatttattatgtaaccgccttccaacaa |
255 |
Q |
| |
|
||||||||||||| |||||||||||||||| || |||| ||||||||||||| || ||||||||||||| |
|
|
| T |
1680231 |
tttggcacaaggaggttcctttaaaagtcataatctttgcttggcatttattacacaatcgccttccaacaa |
1680302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 36020265 - 36020329
Alignment:
| Q |
180 |
atcttttggcacaaggatgttcctttaaaagtcaacatttttgtttggcatttattatgtaaccg |
244 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||| |||||| |||| ||||| ||| ||| ||||||| |
|
|
| T |
36020265 |
atcttttggcataaggaagttccattaaaagccaacatctttgcttggcgtttgttacgtaaccg |
36020329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 32 - 266
Target Start/End: Complemental strand, 23691132 - 23690896
Alignment:
| Q |
32 |
tgttgtgcgcttttactaccaattgttttgcagactgatgtgagtga--ggtggacttgacaacttcacgcctctctaagatacaatgttgttattgttt |
129 |
Q |
| |
|
|||||| | |||||||||||| ||||||||||||| ||||||| ||| |||||| ||| || ||||| |||||| || ||||||||| || || || |
|
|
| T |
23691132 |
tgttgtactcttttactaccagttgttttgcagaccgatgtgaatgacaggtggatttggcagcttcatgcctcttcaaagtacaatgttactagtgctt |
23691033 |
T |
|
| Q |
130 |
acaattatttgacatcaagagaccaatctctacataataatcatacttccatcttttggcacaaggatgttcctttaaaagtcaacatttttgtttggca |
229 |
Q |
| |
|
| |||| |||||||||||| || |||||| || | ||| |||| | | | || ||||||||||| | ||||||||||||||||||||||||| |||||| |
|
|
| T |
23691032 |
aaaattttttgacatcaagggatcaatctttaaacaatgatcacaatactattatttggcacaagaaggttcctttaaaagtcaacatttttgcttggca |
23690933 |
T |
|
| Q |
230 |
tttattatgtaaccgccttccaacaaccaacaactta |
266 |
Q |
| |
|
||||||| |||| | ||||||||||| |||||||| |
|
|
| T |
23690932 |
tttattacgtaaacatcttccaacaactgacaactta |
23690896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 16 - 397
Target Start/End: Complemental strand, 3452893 - 3452510
Alignment:
| Q |
16 |
agaattgaagagtgattgttgtgcgcttttactaccaattgttttgcagactgatgtgagtgag--gtggacttgacaacttcacgcctctctaagatac |
113 |
Q |
| |
|
||||||| ||||||| ||| | | | ||||||||||||||||||||||| | | |||| ||| ||||| ||| |||||||| |||||| ||| |||| |
|
|
| T |
3452893 |
agaattggagagtgaatgtagcgtgattttactaccaattgttttgcaggataacgtgaatgacatgtggatttggcaacttcatgcctctttaaaatac |
3452794 |
T |
|
| Q |
114 |
aatgttgttattgtttacaattatttgacatcaagagaccaatctctacataataatcatacttccatcttttggcacaaggatgttcctttaaaagtca |
213 |
Q |
| |
|
||||||| || ||||||||| | | | ||||||||| ||| || | | ||| ||||| |||| | ||| ||||||||| |||||| |||| |||| |
|
|
| T |
3452793 |
aatgttgctagtgtttacaacttcctaatatcaagagatcaaactttcgacaatgatcatgcttcagttatttcgcacaaggaggttcctctaaatgtca |
3452694 |
T |
|
| Q |
214 |
acatttttgtttggcatttattatgtaaccgccttccaacaaccaacaacttacttaggagaagggtaatccaacaaaatgcattgttgtgctcaggcgg |
313 |
Q |
| |
|
||| ||| | | |||||||| |||||| ||||||||||| ||||||||| ||||||||||||| | |||| |||| ||| || || || || || |
|
|
| T |
3452693 |
acaatttcgcctaacatttattgcgtaaccaacttccaacaacaaacaacttaattaggagaagggttgtgcaaccaaatacatctttttgttcgggtgg |
3452594 |
T |
|
| Q |
314 |
ctgtggctatgcagaggatattgaccatctattcttgcaccgtgaattttttgatcaaatttgatacgatatttatacttggct |
397 |
Q |
| |
|
|||| | || ||| ||||||| ||||| |||||||| | || |||| || |||||||| |||||||||||||||||||| |
|
|
| T |
3452593 |
ttgtgagtttgaagataatattgatcatcttttcttgcattgcgatttttatggacaaatttggtacgatatttatacttggct |
3452510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 49291 - 49329
Alignment:
| Q |
25 |
gagtgattgttgtgcgcttttactaccaattgttttgca |
63 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
49291 |
gagtgaatgttgtgcgcttttactaacaattgttttgca |
49329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 2603737 - 2603691
Alignment:
| Q |
180 |
atcttttggcacaaggatgttcctttaaaagtcaacatttttgtttg |
226 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
2603737 |
atcttttggcataaggaggttccattaaaagtcaacatatttgtttg |
2603691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 21394433 - 21394344
Alignment:
| Q |
16 |
agaattgaagagtgattgttgtgcgcttttactaccaattgttttgcagactgatgtgagtg--aggtggacttgacaacttcacgcctc |
103 |
Q |
| |
|
||||||| || |||| |||||| || ||||| |||| ||||||||||| ||||||||| || ||||||| |||||||||||| ||||| |
|
|
| T |
21394433 |
agaattggagtgtgagtgttgttcgtttttattacctattgttttgcatgctgatgtgaatgacaggtggatttgacaacttcatgcctc |
21394344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 40449469 - 40449227
Alignment:
| Q |
16 |
agaattgaagagtgattgttgtgcgcttttactaccaattgttttgcagactgatgtgagtgagg--tggacttgacaacttcacgcctctctaagatac |
113 |
Q |
| |
|
||||||| |||| || ||||||| ||||||||||||||||||||||| |||||| ||| ||| |||| ||| |||||| |||||| || ||| |
|
|
| T |
40449469 |
agaattggagagggaatgttgtgttcttttactaccaattgttttgcaaactgatatgaatgacaaatggatatgagaacttcgtgcctcttcaaagtac |
40449370 |
T |
|
| Q |
114 |
aatgttgttattgtttacaattatttgacatcaagagaccaatctctacataataatcatacttccatcttttggcacaaggatgttcctttaaaagtca |
213 |
Q |
| |
|
|||||| || || |||||| |||||||||||| || ||| || || | ||| |||| | | | || ||||||||||| | |||||||||||||||| |
|
|
| T |
40449369 |
aatgttactagtgcttacaaccttttgacatcaagggatcaacctttaaacaatgatcaaaatactattatttggcacaagaaggttcctttaaaagtca |
40449270 |
T |
|
| Q |
214 |
acatttttgtttggcatttattatgtaaccgccttccaacaac |
256 |
Q |
| |
|
|||| || ||| | | |||||||||||| || ||||||||||| |
|
|
| T |
40449269 |
acatcttcgttggacgtttattatgtaatcgtcttccaacaac |
40449227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 256
Target Start/End: Original strand, 55416514 - 55416586
Alignment:
| Q |
184 |
tttggcacaaggatgttcctttaaaagtcaacatttttgtttggcatttattatgtaaccgccttccaacaac |
256 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||| | | |||||| ||||||| ||||||||||| |
|
|
| T |
55416514 |
tttggcacaaggaggttcctctaaaagtcaacatttttgctaagtgtttattgcgtaaccgacttccaacaac |
55416586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 281
Target Start/End: Complemental strand, 13318497 - 13318400
Alignment:
| Q |
184 |
tttggcacaaggatgttcctttaaaagtcaacatttttgtttggcatttattatgtaaccgccttccaacaaccaacaacttacttaggagaagggta |
281 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||| | | || |||||| |||||||| |||||| ||| ||||||||| |||| |||||||| |
|
|
| T |
13318497 |
tttggcacaaggaggttcctctaaaagtcaacattttcgcctagcgtttattgtgtaaccgacttccagcaataaacaacttaattagctgaagggta |
13318400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 148
Target Start/End: Original strand, 34702769 - 34702886
Alignment:
| Q |
32 |
tgttgtgcgcttttactaccaattgttttgcagactgatgtgagtg--aggtggacttgacaacttcacgcctctctaagatacaatgttgttattgttt |
129 |
Q |
| |
|
||||||| ||||||| |||||||||||||||| ||||| ||| || ||||||| |||||||||||| |||||| || |||| |||| || ||||| |
|
|
| T |
34702769 |
tgttgtgagcttttattaccaattgttttgcacgctgatatgaatgaaaggtggatttgacaacttcatgcctcttcaaaatac-ttgttactagtgttt |
34702867 |
T |
|
| Q |
130 |
acaattatttgacatcaag |
148 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
34702868 |
acaattttttgacatcaag |
34702886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0217 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0217
Description:
Target: scaffold0217; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 21688 - 21642
Alignment:
| Q |
183 |
ttttggcacaaggatgttcctttaaaagtcaacatttttgtttggca |
229 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
21688 |
ttttggcataaggaggttcctttaaaagtcaacatttttatttggca |
21642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 266
Target Start/End: Original strand, 26907052 - 26907129
Alignment:
| Q |
189 |
cacaaggatgttcctttaaaagtcaacatttttgtttggcatttattatgtaaccgccttccaacaaccaacaactta |
266 |
Q |
| |
|
|||||||| |||||||||||||||||||| || |||| | ||||||| ||||||| ||| ||| ||| |||||||| |
|
|
| T |
26907052 |
cacaaggaggttcctttaaaagtcaacatcttcatttgacgtttattacgtaaccgtctttcaataactgacaactta |
26907129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 36275330 - 36275266
Alignment:
| Q |
202 |
ctttaaaagtcaacatttttgtttggcatttattatgtaaccgccttccaacaaccaacaactta |
266 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||| |||| | |||||||||||| |||||||| |
|
|
| T |
36275330 |
ctttaaaagtcaacatctttgtttgtagtttattacgtaatagtcttccaacaaccgacaactta |
36275266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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