View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10578_low_3 (Length: 398)
Name: NF10578_low_3
Description: NF10578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10578_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 143; Significance: 5e-75; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 59 - 276
Target Start/End: Original strand, 28749155 - 28749372
Alignment:
| Q |
59 |
taatctatctttcactaaggtttacaaaagcagatcaaactctactaggaaagatgcattgataactcattgaacatatttgtcaaaatatactaatact |
158 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| || |||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28749155 |
taatctatctttcactacagttgacaaaagcatattaaactctattaggaaatatgcacagataactcattgaacatatttgtcaaaatatactaatact |
28749254 |
T |
|
| Q |
159 |
aagaatgttaatagatactccatttaacataaaaactaacaattgttgtnnnnnnnnncaaaccaagaatttaaggttgaagaaagatctatgtcaacag |
258 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28749255 |
aagaatgttgatagatacttcatttaacataaaaactaacaattgttgtaaaaaaaaacaaagcaagaatttaaggttgaagaaagatctatgtcaacag |
28749354 |
T |
|
| Q |
259 |
tctcctacatccacataa |
276 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
28749355 |
tctcctacatccacataa |
28749372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 28749422 - 28749479
Alignment:
| Q |
326 |
gtgtattgggcaaaatcttgagacgaaaacttttgagtgaagttccaaatatggttgc |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28749422 |
gtgtattgggcaaaatcttgagacgaaaacttttgagtgaagttccaaatatggttgc |
28749479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 28748848 - 28748899
Alignment:
| Q |
6 |
aggagcacagaagaccatcaatatcaatgttggttgagcttatagaaatata |
57 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28748848 |
aggatcactgaagaccatcaatatcaatgttggttgagcttatagaaatata |
28748899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University