View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10578_low_6 (Length: 277)
Name: NF10578_low_6
Description: NF10578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10578_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 44839541 - 44839791
Alignment:
| Q |
16 |
aactatttcatgatctttctcttcttcttttaaacctttccatttaccaaatgattccccagctggaactacggtaccaccccttctacgcaattcctca |
115 |
Q |
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| T |
44839541 |
aactatttcatgatctttctcttcttcttttaaacctttccatttaccaaatgattccccagctggaactacggtaccaccccttctacgcaattcctca |
44839640 |
T |
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| Q |
116 |
tcaagaagtacagcaagctccctgtgaaccttcaccctctttgaaccctttgtcttagcatgattcatcaggggcagcaggccactgtaccaatcaatag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44839641 |
tcaagaagtacagcaagctccctgtgaaccttcaccctctttgaaccctttgtcttagcatgattcatcaggggcagcaggccactgtaccaatcaatag |
44839740 |
T |
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| Q |
216 |
aaccaggaccactttgacaagctggacaatgccactctctttccggttcat |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44839741 |
aaccaggaccactttgacaagctggacaatgccactctctttccggttcat |
44839791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 44851298 - 44851548
Alignment:
| Q |
16 |
aactatttcatgatctttctcttcttcttttaaacctttccatttaccaaatgattccccagctggaactacggtaccaccccttctacgcaattcctca |
115 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||| ||||||||||||||||||||| |
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| T |
44851298 |
aactatctcatgatctttctcttcttcttttaaacctttccatttaccaaatgcttccccagctgggactactgtagtgccccttctacgcaattcctca |
44851397 |
T |
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| Q |
116 |
tcaagaagtacagcaagctccctgtgaaccttcaccctctttgaaccctttgtcttagcatgattcatcaggggcagcaggccactgtaccaatcaatag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||| |
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| T |
44851398 |
tcaagaagtacagcaagctccctgtgaaccttcaccctttttgaaccctttgtcttagcatgattcatcaggggctgcagacctctgtaccaatcaatag |
44851497 |
T |
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| Q |
216 |
aaccaggaccactttgacaagctggacaatgccactctctttccggttcat |
266 |
Q |
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||||||||||| ||||||||||||||| ||||||| ||| || ||||||| |
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| T |
44851498 |
caccaggaccaccttgacaagctggacagtgccactgtctctctggttcat |
44851548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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