View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10578_low_7 (Length: 267)

Name: NF10578_low_7
Description: NF10578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10578_low_7
NF10578_low_7
[»] chr2 (2 HSPs)
chr2 (21-174)||(13043664-13043817)
chr2 (23-163)||(29081115-29081254)
[»] chr4 (1 HSPs)
chr4 (36-168)||(26261246-26261376)
[»] chr8 (2 HSPs)
chr8 (28-174)||(44718416-44718561)
chr8 (23-122)||(3046577-3046675)
[»] chr5 (3 HSPs)
chr5 (23-122)||(6665871-6665969)
chr5 (23-112)||(32659083-32659171)
chr5 (23-122)||(8871443-8871541)
[»] chr7 (4 HSPs)
chr7 (28-121)||(45280951-45281044)
chr7 (36-136)||(26244870-26244970)
chr7 (21-122)||(22205112-22205212)
chr7 (21-122)||(22229527-22229627)
[»] chr6 (2 HSPs)
chr6 (96-168)||(9150059-9150131)
chr6 (23-115)||(21112287-21112378)
[»] chr3 (5 HSPs)
chr3 (23-122)||(22976562-22976659)
chr3 (23-115)||(959034-959125)
chr3 (23-115)||(25041537-25041629)
chr3 (23-122)||(42864469-42864567)
chr3 (23-78)||(29359931-29359984)
[»] chr1 (2 HSPs)
chr1 (23-115)||(33368977-33369067)
chr1 (119-163)||(29096476-29096520)


Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 21 - 174
Target Start/End: Complemental strand, 13043817 - 13043664
Alignment:
Q  21 cactatgaaaaacatattgtctcttctaacccccaaaaactagagttcctcgtcaccactaagagatagttattcccttttctaaccattaccaccaatt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||    
T  13043817 cactatgaaaaacatattgtctcttctaacccccaaaaactagggttcctcgtcaccgctaagcgatagttattcccttttctaaccattatcaccaatt 13043718  T
Q  121 gacccaatctcaacattagcatcattaattgtctccatcaacaactccaaagaa 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13043717 gacccaatctcaacattagcatcattaattgtctccatcaacaactccaaagaa 13043664  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 23 - 163
Target Start/End: Original strand, 29081115 - 29081254
Alignment:
Q  23 ctatgaaaaacatattgtctcttctaacccccaaaaactagagttcctcgtcaccactaagagatagttattcccttttctaaccattaccaccaattga 122  Q
    ||||||||||||||||||||||||||| |||  |||| ||| |||||||||||||||  ||  ||||||||||||| ||||||||||||||||| |||||    
T  29081115 ctatgaaaaacatattgtctcttctaatcccagaaaa-tagggttcctcgtcaccaccgagcaatagttattccctcttctaaccattaccaccgattga 29081213  T
Q  123 cccaatctcaacattagcatcattaattgtctccatcaaca 163  Q
    |||||||||||||| | ||||||| |||| |||||||||||    
T  29081214 cccaatctcaacatcaacatcattgattgcctccatcaaca 29081254  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 168
Target Start/End: Original strand, 26261246 - 26261376
Alignment:
Q  36 attgtctcttctaacccccaaaaactagagttcctcgtcaccactaagagatagttattcccttttctaaccattaccaccaattgacccaatctcaaca 135  Q
    |||||||||||||||||| ||||  ||||||| |||||||||||  ||  |||| |||||||| |||||||||||||||||||||| | |||||||||||    
T  26261246 attgtctcttctaaccccaaaaa--tagagtttctcgtcaccaccgagctatagctattccctcttctaaccattaccaccaattgcctcaatctcaaca 26261343  T
Q  136 ttagcatcattaattgtctccatcaacaactcc 168  Q
    |  |||||| | |||| ||||||||||| ||||    
T  26261344 tctgcatcactgattgcctccatcaacacctcc 26261376  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 44718561 - 44718416
Alignment:
Q  28 aaaaacatattgtctcttctaacccccaaaaactagagttcctcgtca-ccactaagagatagttattcccttttctaaccattaccaccaattgaccca 126  Q
    |||||||| ||||||||||||||||| ||||| ||| |||||| |||| ||||| |  |||||||||| ||| |||||||| |||||| ||||| ||  |    
T  44718561 aaaaacat-ttgtctcttctaaccccaaaaaa-tagggttccttgtcaaccactgaacgatagttatttcctcttctaacctttaccatcaattaactga 44718464  T
Q  127 atctcaacattagcatcattaattgtctccatcaacaactccaaagaa 174  Q
    |||||||||| ||||||| | |||| ||||||||||| ||||| ||||    
T  44718463 atctcaacatcagcatcaatgattgcctccatcaacacctccagagaa 44718416  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 3046675 - 3046577
Alignment:
Q  23 ctatgaaaaacatattgtctcttctaacccccaaaaactagagttcctcgtcaccactaagagatagttattcccttttctaaccattaccaccaattga 122  Q
    |||| |||||||||||||||||||||||||  ||||| ||| ||| |||||||||||  |  ||||  |||||||| |||||||||||||||||||||||    
T  3046675 ctatcaaaaacatattgtctcttctaacccaaaaaaa-tagggtttctcgtcaccacataacgataactattccctcttctaaccattaccaccaattga 3046577  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 122
Target Start/End: Original strand, 6665871 - 6665969
Alignment:
Q  23 ctatgaaaaacatattgtctcttctaacccccaaaaactagagttcctcgtcaccactaagagatagttattcccttttctaaccattaccaccaattga 122  Q
    |||| |||||||||||||||||||||||||  ||||| ||| ||| |||||||||||  || ||||  |||||||| |||||||||||||||||||||||    
T  6665871 ctatcaaaaacatattgtctcttctaacccaaaaaaa-tagggtttctcgtcaccacatagcgataactattccctcttctaaccattaccaccaattga 6665969  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 32659083 - 32659171
Alignment:
Q  23 ctatgaaaaacatattgtctcttctaacccccaaaaactagagttcctcgtcaccactaagagatagttattcccttttctaaccattac 112  Q
    |||| |||||||||||||||||||||| ||||||||  ||| ||| |||||||||||  || ||||| |||||| | ||||| |||||||    
T  32659083 ctatcaaaaacatattgtctcttctaa-ccccaaaatatagggtttctcgtcaccacatagcgatagctattccatcttctacccattac 32659171  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 122
Target Start/End: Original strand, 8871443 - 8871541
Alignment:
Q  23 ctatgaaaaacatattgtctcttctaacccccaaaaactagagttcctcgtcaccactaagagatagttattcccttttctaaccattaccaccaattga 122  Q
    |||| |||| |||||||||||||||||||   ||||| ||| ||| |||||||||||  ||  |||| ||||| || |||||||||||||||| ||||||    
T  8871443 ctatcaaaatcatattgtctcttctaacctaaaaaaa-tagggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactaattga 8871541  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 45280951 - 45281044
Alignment:
Q  28 aaaaacatattgtctcttctaacccccaaaaactagagttcctcgtcaccactaagagatagttattcccttttctaaccattaccaccaattg 121  Q
    |||||||||||||||||||||||||  ||||| ||| ||| ||| |||||||  || |||||||||||||| ||||||||| || |||||||||    
T  45280951 aaaaacatattgtctcttctaacccaaaaaaaatagggtttctcatcaccacacagcgatagttattccctcttctaaccaatatcaccaattg 45281044  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 136
Target Start/End: Complemental strand, 26244970 - 26244870
Alignment:
Q  36 attgtctcttctaacccccaaaaactagagttcctcgtcaccactaagagatagttattcccttttctaaccattaccaccaattgacccaatctcaaca 135  Q
    ||||||||||| |||||| ||||| ||| ||| ||| |||||||||| | || ||||||| || || | |||||||||||| |||| | |||||||||||    
T  26244970 attgtctcttccaaccccaaaaaagtagggtttctcatcaccactaacaaatcgttattctctcttttgaccattaccaccgattgcctcaatctcaaca 26244871  T
Q  136 t 136  Q
    |    
T  26244870 t 26244870  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 22205212 - 22205112
Alignment:
Q  21 cactatgaaaaacatattgtctcttctaacccccaaaaactagagttcctcgtcaccactaagagatagttattcccttttctaaccattaccaccaatt 120  Q
    |||||| |||||||| |||||||||||| |||  ||||| ||| ||| ||||||||||   || ||||| |||||||| |||||||||||||| || |||    
T  22205212 cactataaaaaacattttgtctcttctatcccaaaaaaa-tagggtttctcgtcaccaaatagcgatagctattccctcttctaaccattaccgccgatt 22205114  T
Q  121 ga 122  Q
    ||    
T  22205113 ga 22205112  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 22229527 - 22229627
Alignment:
Q  21 cactatgaaaaacatattgtctcttctaacccccaaaaactagagttcctcgtcaccactaagagatagttattcccttttctaaccattaccaccaatt 120  Q
    |||||| |||||||| |||||||||||| |||  ||||| ||| ||| ||||||||||   || ||||| |||||||| |||||||||||||| || |||    
T  22229527 cactataaaaaacattttgtctcttctatcccaaaaaaa-tagggtttctcgtcaccaaatagcgatagctattccctcttctaaccattaccgccgatt 22229625  T
Q  121 ga 122  Q
    ||    
T  22229626 ga 22229627  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 9150131 - 9150059
Alignment:
Q  96 ccttttctaaccattaccaccaattgacccaatctcaacattagcatcattaattgtctccatcaacaactcc 168  Q
    ||||||||| ||||||||||| ||||||||||||||||||| ||||||| | |||| ||||||||||| ||||    
T  9150131 ccttttctatccattaccaccgattgacccaatctcaacatcagcatcactgattgcctccatcaacacctcc 9150059  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 21112287 - 21112378
Alignment:
Q  23 ctatgaaaaacatattgtctcttctaacccccaaaaactagagttcctcgtcaccactaagagatagttattcccttttctaaccattaccac 115  Q
    |||| |||| ||||||||||||||||| ||  ||||| ||| ||| |||||||||||  ||  |||| ||||| || ||||||||||||||||    
T  21112287 ctatcaaaatcatattgtctcttctaa-cctaaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccac 21112378  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 22976659 - 22976562
Alignment:
Q  23 ctatgaaaaacatattgtctcttctaacccccaaaaactagagttcctcgtcaccactaagagatagttattcccttttctaaccattaccaccaattga 122  Q
    |||| |||||||||||||||||| ||||||  ||||| ||| ||| |||||||||||  || ||||| |||| ||| ||||||||||||||||| |||||    
T  22976659 ctatcaaaaacatattgtctcttttaaccc--aaaaaatagggtttctcgtcaccacatagcgatagctatttcctcttctaaccattaccaccgattga 22976562  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 959034 - 959125
Alignment:
Q  23 ctatgaaaaacatattgtctcttctaacccccaaaaactagagttcctcgtcaccactaagagatagttattcccttttctaaccattaccac 115  Q
    |||| |||| |||||||||||||||||||   ||||| ||| ||| |||||||||||  ||| |||| ||||| || ||||||||||||||||    
T  959034 ctatcaaaatcatattgtctcttctaacctaaaaaaa-tagggtttctcgtcaccacatagaaatagctattctctcttctaaccattaccac 959125  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 25041537 - 25041629
Alignment:
Q  23 ctatgaaaaacatattgtctcttctaacccccaaaaactagagttcctcgtcaccactaagagatagttattcccttttctaaccattaccac 115  Q
    |||| |||| |||||||||||||||||||   ||||| ||| ||| |||||||||||  ||  |||| ||||| ||||| |||||||||||||    
T  25041537 ctatcaaaatcatattgtctcttctaacctaaaaaaaatagggtttctcgtcaccacatagcaatagctattctcttttttaaccattaccac 25041629  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 122
Target Start/End: Original strand, 42864469 - 42864567
Alignment:
Q  23 ctatgaaaaacatattgtctcttctaacccccaaaaactagagttcctcgtcaccactaagagatagttattcccttttctaaccattaccaccaattga 122  Q
    |||| |||| |||||||||||||||||||   ||||| ||| ||| |||||||||||  ||  |||| ||||| || |||||||||||||||| ||||||    
T  42864469 ctatcaaaatcatattgtctcttctaacctaaaaaaa-tagggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactaattga 42864567  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 29359931 - 29359984
Alignment:
Q  23 ctatgaaaaacatattgtctcttctaacccccaaaaactagagttcctcgtcacca 78  Q
    |||| ||||||||||||||||||||||  |||||||| ||| ||| ||||||||||    
T  29359931 ctatcaaaaacatattgtctcttctaa--cccaaaaaatagtgtttctcgtcacca 29359984  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 33368977 - 33369067
Alignment:
Q  23 ctatgaaaaacatattgtctcttctaacccccaaaaactagagttcctcgtcaccactaagagatagttattcccttttctaaccattaccac 115  Q
    |||| ||||||||||| |||||||||||||  ||||| | | ||| |||||||||||  || ||||| |||||||| ||||||||||||||||    
T  33368977 ctatcaaaaacatattatctcttctaaccc--aaaaaattgggtttctcgtcaccacatagcgatagctattccctcttctaaccattaccac 33369067  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 29096476 - 29096520
Alignment:
Q  119 ttgacccaatctcaacattagcatcattaattgtctccatcaaca 163  Q
    |||||||||||||||||| ||||||| | |||| |||||||||||    
T  29096476 ttgacccaatctcaacatcagcatcactgattgcctccatcaaca 29096520  T

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