View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10578_low_8 (Length: 254)
Name: NF10578_low_8
Description: NF10578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10578_low_8 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 39576904 - 39576672
Alignment:
| Q |
22 |
aaacaaacaaggaagaagaaaatccaaagctaaagacttaaccacactccacggcttaagtcttcctcttatctcactccattcttcattggttcccttt |
121 |
Q |
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| T |
39576904 |
aaacaaacaaggaagaagaaaatccaaagctaaagacttaaccacactccacggcttaagtcttcctcttatctcactccattcttcattggttcccttt |
39576805 |
T |
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| Q |
122 |
cactactgataagttacaagaatttcaatcatcaatatcatcatagcttaaaaaatcatcaaccaaacaaaactttcctctctcccaatggcaattcaac |
221 |
Q |
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| T |
39576804 |
cactactgataagttacaagaatttcaatcatcaatatcatcatagcttaaaaaatcatcaaccaaacaaaactttcctctctcccaatggcaattcaac |
39576705 |
T |
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| Q |
222 |
actctatcattttactggcttttcttcttcttc |
254 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
39576704 |
actctatcattttactggcttttcttcttcttc |
39576672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 22 - 155
Target Start/End: Complemental strand, 39571720 - 39571587
Alignment:
| Q |
22 |
aaacaaacaaggaagaagaaaatccaaagctaaagacttaaccacactccacggcttaagtcttcctcttatctcactccattcttcattggttcccttt |
121 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39571720 |
aaacaaacaaggaagaagaaaatccaaagctgacgacttaaccacactccacggcttaagtcttcctcttatctcactccattcttcattggttcccctt |
39571621 |
T |
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| Q |
122 |
cactactgataagttacaagaatttcaatcatca |
155 |
Q |
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| T |
39571620 |
cactacttctaacttttaagaatttcaatcatca |
39571587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 39525636 - 39525531
Alignment:
| Q |
142 |
aatttcaatcatcaatatcatcatagcttaaaaaatcatcaaccaaacaaaactttcctctctcccaatggcaattcaacactctatcattttactggct |
241 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |||||| || |||| ||||| | ||||||||||||||||||||||| ||||| ||| |
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| T |
39525636 |
aattgcaatcatcaatatcatcatagcttaaaaaatcatcaaacaaacataattttcaactctctccatggcaattcaacactctatcatcttacttgct |
39525537 |
T |
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| Q |
242 |
tttctt |
247 |
Q |
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|||||| |
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| T |
39525536 |
tttctt |
39525531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 39544862 - 39544817
Alignment:
| Q |
206 |
ccaatggcaattcaacactctatcattttactggcttttcttcttc |
251 |
Q |
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| T |
39544862 |
ccaatggcagttcaacacactatcattttacttgcttttcttcttc |
39544817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 251
Target Start/End: Complemental strand, 39511832 - 39511781
Alignment:
| Q |
200 |
tctctcccaatggcaattcaacactctatcattttactggcttttcttcttc |
251 |
Q |
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|||||||||||| |||||||||| |||||||||||||| ||||||||||| |
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| T |
39511832 |
tctctcccaatgacaattcaacagtctatcattttactaatttttcttcttc |
39511781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 39512199 - 39512162
Alignment:
| Q |
79 |
aagtcttcctcttatctcactccattcttcattggttc |
116 |
Q |
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| T |
39512199 |
aagtcttcctcttatctaactccattctttattggttc |
39512162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 39581265 - 39581213
Alignment:
| Q |
199 |
ctctctcccaatggcaattcaacactctatcattttactggcttttcttcttc |
251 |
Q |
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||||||||| |||||||||||||| |||||| || |||| |||||||||||| |
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| T |
39581265 |
ctctctccccatggcaattcaacagtctatcgttctactaacttttcttcttc |
39581213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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