View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10578_low_9 (Length: 250)

Name: NF10578_low_9
Description: NF10578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10578_low_9
NF10578_low_9
[»] chr3 (15 HSPs)
chr3 (14-250)||(5299151-5299387)
chr3 (57-250)||(5268519-5268712)
chr3 (14-250)||(5250589-5250825)
chr3 (57-234)||(4388326-4388503)
chr3 (14-122)||(6519663-6519771)
chr3 (14-122)||(6553939-6554047)
chr3 (14-119)||(6479486-6479591)
chr3 (14-122)||(6736410-6736518)
chr3 (50-122)||(6947725-6947797)
chr3 (14-122)||(8455074-8455182)
chr3 (15-237)||(8568334-8568556)
chr3 (58-250)||(8590193-8590385)
chr3 (46-119)||(6448286-6448359)
chr3 (150-250)||(6479355-6479455)
chr3 (143-207)||(6259731-6259795)
[»] scaffold0425 (1 HSPs)
scaffold0425 (14-122)||(6978-7086)
[»] chr7 (1 HSPs)
chr7 (15-121)||(6572800-6572906)


Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 5299151 - 5299387
Alignment:
Q  14 agacccaggcttttagttcaaactgtttctgcatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgct 113  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5299151 agacccaggcttttagttcaaactgtttctgtatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagacccactatgct 5299250  T
Q  114 gattattggtacacgatcgccagcatctatgtcggaaagtaaaaatttggttacttcctctttgtcaccatctctgccatatatgctcgattcatccacc 213  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5299251 gattattggtacacggtcgccagcatctatgtcggaaagtaaaaatttggttacttcctctttgtcaccatctctgccatatatgctcgattcatccacc 5299350  T
Q  214 aaagatgtacttggcaatctttttaaagctttccaac 250  Q
    |||||||||||||||||||||||||||||||||||||    
T  5299351 aaagatgtacttggcaatctttttaaagctttccaac 5299387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 57 - 250
Target Start/End: Original strand, 5268519 - 5268712
Alignment:
Q  57 attgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgctgattattggtacacgatcgccagcatctatgtcggaaagtaaa 156  Q
    ||||||||| ||||||||||||||||| || ||||||||||| |||||||| |||||||||||||||||| | | |||    |||||||| || ||||||    
T  5268519 attgtacacgagttgagcaagggtggtcttacccattccaccgagacccactatgctgattattggtacatggttgcccttgtctatgtcagacagtaaa 5268618  T
Q  157 aatttggttacttcctctttgtcaccatctctgccatatatgctcgattcatccaccaaagatgtacttggcaatctttttaaagctttccaac 250  Q
    || ||| |||  ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| | ||| | ||||||||    
T  5268619 aaattgattaactcctccttgtcaccatctctaccatatatgctggattcatccaccaaagatgtagttggcaatctatctaagggtttccaac 5268712  T

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Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 5250589 - 5250825
Alignment:
Q  14 agacccaggcttttagttcaaactgtttctgcatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgct 113  Q
    ||||||| ||||| |||||||| || | ||||||| ||| ||  |||||| |||| |||||||| ||||| || ||||||||||| |||||||| |||||    
T  5250589 agacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacgcaagctgagcaagagtggtcttacccattccaccgagacccactatgct 5250688  T
Q  114 gattattggtacacgatcgccagcatctatgtcggaaagtaaaaatttggttacttcctctttgtcaccatctctgccatatatgctcgattcatccacc 213  Q
    ||||||||||||| ||| ||||   | |||||| || |||||||| |   |||  ||||| |||||||||||||| ||||||||||||||||||||||||    
T  5250689 gattattggtacatgattgccactgtttatgtcagacagtaaaaaatcaattaactcctccttgtcaccatctctaccatatatgctcgattcatccacc 5250788  T
Q  214 aaagatgtacttggcaatctttttaaagctttccaac 250  Q
    |||| |||| |||| ||||| | ||| | ||||||||    
T  5250789 aaagctgtagttggaaatctatctaagggtttccaac 5250825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 57 - 234
Target Start/End: Complemental strand, 4388503 - 4388326
Alignment:
Q  57 attgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgctgattattggtacacgatcgccagcatctatgtcggaaagtaaa 156  Q
    |||||||||||| |||||||| ||||| || ||||||||||| |||||||| |||||||||||||||||  | | |||    |||||||| || ||||||    
T  4388503 attgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattggtacttggttgccgctgtctatgtcagacagtaaa 4388404  T
Q  157 aatttggttacttcctctttgtcaccatctctgccatatatgctcgattcatccaccaaagatgtacttggcaatctt 234  Q
    || |||  ||  |||||||||||||| | ||| ||||||||||||||| ||||||||||||||||| |||| ||||||    
T  4388403 aagttgactaactcctctttgtcaccgtttctaccatatatgctcgatccatccaccaaagatgtagttggaaatctt 4388326  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 6519771 - 6519663
Alignment:
Q  14 agacccaggcttttagttcaaactgtttctgcatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgct 113  Q
    ||||||| ||||| |||||||| || ||||   ||||||||| |||||| ||| ||||||||||||||||||| |||||||| |||| |||||| |||||    
T  6519771 agacccatgctttaagttcaaaatgcttctttgtcatgttgtcattgtagacatgttgagcaagggtggttttacccattcctcctaaacccactatgct 6519672  T
Q  114 gattattgg 122  Q
    |||||||||    
T  6519671 gattattgg 6519663  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 6554047 - 6553939
Alignment:
Q  14 agacccaggcttttagttcaaactgtttctgcatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgct 113  Q
    ||||||| ||||| |||||||| || ||||  ||| ||||||  ||||||||||| | ||||||||||||||| ||||| || |||| |||||| |||||    
T  6554047 agacccatgctttaagttcaaaatgcttctttatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgct 6553948  T
Q  114 gattattgg 122  Q
    |||||||||    
T  6553947 gattattgg 6553939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 6479591 - 6479486
Alignment:
Q  14 agacccaggcttttagttcaaactgtttctgcatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgct 113  Q
    ||||||| ||||| |||||||| |||| ||  ||| ||||||| ||||||||||| | ||||||||||||||| ||||| || |||| ||| || |||||    
T  6479591 agacccatgctttaagttcaaaatgttcctctatcttgttgttgttgtacacaagcttagcaagggtggttttccccatccctcctaaaccaactatgct 6479492  T
Q  114 gattat 119  Q
    ||||||    
T  6479491 gattat 6479486  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 6736410 - 6736518
Alignment:
Q  14 agacccaggcttttagttcaaactgtttctgcatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgct 113  Q
    ||||||| ||||| |||||||| || ||||  ||| ||||||  ||||||||||| | ||||||||||||||| ||||| || |||| |||||| |||||    
T  6736410 agacccatgctttaagttcaaaatgcttctttatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgct 6736509  T
Q  114 gattattgg 122  Q
     ||||||||    
T  6736510 aattattgg 6736518  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 6947725 - 6947797
Alignment:
Q  50 tgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgctgattattgg 122  Q
    |||||| |||||||||||| | ||||||||||||||| ||||| || |||| |||||| ||||||||||||||    
T  6947725 tgttgtcattgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgctgattattgg 6947797  T

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Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 8455074 - 8455182
Alignment:
Q  14 agacccaggcttttagttcaaactgtttctgcatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgct 113  Q
    ||||||| ||||| |||||||| || | ||  ||| |||||| |||||||||||| | ||||||||||||||| ||||| || |||| ||| || |||||    
T  8455074 agacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatccctcctaaaccgactatgct 8455173  T
Q  114 gattattgg 122  Q
    |||||||||    
T  8455174 gattattgg 8455182  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 8568556 - 8568334
Alignment:
Q  15 gacccaggcttttagttcaaactgtttctgcatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgctg 114  Q
    |||||| ||||| |||||||| || ||||  ||| ||| || |||||| |||||| ||||||||||||| || ||||| |||||||||||||| || ||     
T  8568556 gacccaagctttaagttcaaattgcttctctatcttgtggtcattgtagacaagtcgagcaagggtggtcttacccatcccacctagacccacaatactt 8568457  T
Q  115 attattggtacacgatcgccagcatctatgtcggaaagtaaaaatttggttacttcctctttgtcaccatctctgccatatatgctcgattcatccacca 214  Q
    ||||     ||| | | |||| ||||  ||||  |||| ||| | ||| ||| ||  | ||| ||| ||||||| ||||||||||  |||||||||||||    
T  8568456 attacgctcacatggttgccaccatcattgtctaaaagcaaataattgattattttatttttatcatcatctctaccatatatgcaagattcatccacca 8568357  T
Q  215 aagatgtacttggcaatcttttt 237  Q
    |||| | | ||||||||||||||    
T  8568356 aagacgcagttggcaatcttttt 8568334  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 250
Target Start/End: Original strand, 8590193 - 8590385
Alignment:
Q  58 ttgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgctgattattggtacacgatcgccagcatctatgtcggaaagtaaaa 157  Q
    ||||||||||| | ||||||||||||||| ||||| || |||| ||| || |||||||||||||| || || | ||||  |||  || | | ||||||||    
T  8590193 ttgtacacaagcttagcaagggtggttttccccatccctcctaaaccgactatgctgattattggaacgcggttgccactatcattgcctgcaagtaaaa 8590292  T
Q  158 atttggttacttcctctttgtcaccatctctgccatatatgctcgattcatccaccaaagatgtacttggcaatctttttaaagctttccaac 250  Q
    | ||| ||| ||  |  || ||| ||||||| |||||||||||||| |||||||| | || ||||  || ||| |||||| ||| ||||||||    
T  8590293 acttgattagttttttcttatcaacatctctaccatatatgctcgactcatccacaagagctgtagatgacaacctttttgaaggtttccaac 8590385  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 6448359 - 6448286
Alignment:
Q  46 atcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgctgattat 119  Q
    |||||||||| |||||||||||| | |||||  ||||| || ||||| ||||| |||||||| |||||||||||    
T  6448359 atcatgttgtgattgtacacaagcttagcaaaagtggtcttacccatcccacccagacccactatgctgattat 6448286  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 6479455 - 6479355
Alignment:
Q  150 aagtaaaaatttggttacttcctctttgtcaccatctctgccatatatgctcgattcatccaccaaagatgtacttggcaatctttttaaagctttccaa 249  Q
    ||||||||||||| | | ||| || |||||| ||||||||||||||||||| || |||||||| | ||  |||  || |||||||||| ||| |||||||    
T  6479455 aagtaaaaatttgataagttcttccttgtcaacatctctgccatatatgctggactcatccacgagagccgtagatgacaatctttttgaaggtttccaa 6479356  T
Q  250 c 250  Q
    |    
T  6479355 c 6479355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 6259731 - 6259795
Alignment:
Q  143 tgtcggaaagtaaaaatttggttacttcctctttgtcaccatctctgccatatatgctcgattca 207  Q
    |||| ||||||||||||||| ||| ||||||||| ||||  ||||| ||||||||| | ||||||    
T  6259731 tgtctgaaagtaaaaatttgattatttcctctttttcacgttctctaccatatatgatagattca 6259795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 7086 - 6978
Alignment:
Q  14 agacccaggcttttagttcaaactgtttctgcatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgct 113  Q
    ||||||| ||||| |||||||| || ||||  ||| ||||||  ||||||||||| | ||||||||||||||| ||||| || |||| |||||| |||||    
T  7086 agacccatgctttaagttcaaaatgcttctttatcttgttgtctttgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgct 6987  T
Q  114 gattattgg 122  Q
    |||||||||    
T  6986 gattattgg 6978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 6572906 - 6572800
Alignment:
Q  15 gacccaggcttttagttcaaactgtttctgcatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgctg 114  Q
    |||||| ||||| || ||||||||||||| |||| | | || |||||| ||||| |||||||||||||| || ||||| ||||| | |||||| ||||||    
T  6572906 gacccaagctttaaggtcaaactgtttctccatcctctggtcattgtagacaagctgagcaagggtggtcttccccatcccacccaaacccactatgctg 6572807  T
Q  115 attattg 121  Q
    |||||||    
T  6572806 attattg 6572800  T

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