View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_high_10 (Length: 336)
Name: NF10579_high_10
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 36154799 - 36155099
Alignment:
| Q |
19 |
gtttataccgacagcaaacttgctatttatcaagttgatagggtacttatgcctcttgatcttgttcttccggctaaggctccagctctggctcctgcac |
118 |
Q |
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| T |
36154799 |
gtttataccgacagcaaacttgctatttatcaggttgataaggtacttatgcctcttgatcttgttcttccggctaaggctccagctctggctcctgcac |
36154898 |
T |
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| Q |
119 |
cagctaagggtttgttgcctaaggctggaaaaacgaattcttcagttgcagatgatggtagtggtgctggtagtgatgatggtgatggcaaggatttacc |
218 |
Q |
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| T |
36154899 |
cagctaagggtttgttgcctaaggctggaaaaacgaattcttcagttgcagatgatggtagtggtgctggtagtgatgatggtgatggtaaggatttacc |
36154998 |
T |
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| Q |
219 |
tgctgatgtttctgctgcagggtctgtgatgtgggtgaatgctgttgttgtttttggaatgggtttggttggtggagttgttctataaggtttatttgat |
318 |
Q |
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| T |
36154999 |
tgctgatgtttctgctgcagggtctgtgatgtgggtgaatgctgttgttgtttttggaatgggtttggttggtggagctgttctataaggtttatttgat |
36155098 |
T |
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| Q |
319 |
g |
319 |
Q |
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| T |
36155099 |
g |
36155099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 36151413 - 36151703
Alignment:
| Q |
19 |
gtttataccgacagcaaacttgctatttatcaagttgatagggtacttatgcctcttgatcttgttcttccggctaaggctccagctctggctcctgcac |
118 |
Q |
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| T |
36151413 |
gtttataccgacagcaaacttgctatttatcaggttgataaggtacttatgcctcttgatcttgttcttccggctaaggctccagctctggctcctgcac |
36151512 |
T |
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| Q |
119 |
cagctaagggtttgttgcctaaggctggaaaaacgaattcttcagttgcagatgatggtagtggtgctggtagtgatgatggtgatggcaaggatttacc |
218 |
Q |
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| T |
36151513 |
cagctaagggtttgttgcctaaggctggaaaaacgaattcttcagttgcagatgatggtagtggtgctggtagtgatgatggtgatggcaaggatttacc |
36151612 |
T |
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| Q |
219 |
tgctgatgtttctgctgcagggtctgtgatgtgggtgaatgctgttgttgtttttggaatgggtttggttggtggagttgttctataaggt |
309 |
Q |
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| T |
36151613 |
tgctgatatttctgctgcagggtctgtgatgtgggtgaatgctgttgttgtttttggaatgggtttggttggtggagttgttctataaggt |
36151703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 5273922 - 5274006
Alignment:
| Q |
17 |
cagtttataccgacagcaaacttgctatttatcaagttgatagggtacttatgcctcttgatcttgttcttccggctaaggctcc |
101 |
Q |
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||||||| || |||| |||||| ||||| ||||| ||||| | ||| ||| | |||||||||||||| ||||| ||||| ||||| |
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| T |
5273922 |
cagtttacacagacaacaaactagctatatatcaggttgacaaggttcttgttcctcttgatcttgtgcttcctgctaaagctcc |
5274006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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