View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10579_high_19 (Length: 260)
Name: NF10579_high_19
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_high_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 31733339 - 31733091
Alignment:
| Q |
1 |
ttaaacaggtttagatttcacttttaatagctagttcattagacgagtgatactcatgccggggtaggcttgagaattgagatcaattctcacaacatga |
100 |
Q |
| |
|
|||||||||||||||| |||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31733339 |
ttaaacaggtttagatctcacttctagtagctagttcattagacgagtgatactcatgtcggggtaggcttgagaattgagatcaattctcacaacatga |
31733240 |
T |
|
| Q |
101 |
cttgaatttaattacgaaaagctagatgtgtccaaatgcacatatatattgtagatatatctttaaattcttaacttgctatctaataggtactaagata |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
31733239 |
cttgaatttaattacgaaaagttagatgtgtccaaatgcacatatacattgtagatatatctttaaattcttaacttgctatctgatgggtactaagata |
31733140 |
T |
|
| Q |
201 |
ccaaccacattagttttaagaactttatgaaactttagccacttttcat |
249 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31733139 |
ccaaccacattacttttaagaattttatgaaactttagccacttttcat |
31733091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 32852775 - 32853032
Alignment:
| Q |
1 |
ttaaacaggtttagatttcacttttaatagctagttcattagacgagtgatactcatgccggggtaggcttgagaattgagatcaattctcacaacatga |
100 |
Q |
| |
|
|||||| || |||||| ||||| |||||||||||| ||| |||||| ||| ||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
32852775 |
ttaaacgggattagatctcactcctaatagctagtttatttgacgagggatgctcatgccggggtaggcttgaga-------tcaattttcacaacatga |
32852867 |
T |
|
| Q |
101 |
cttgaatttaattacgaaaagcta-----------gatgtgtccaaatgcacatatatattgtagatatatc-----tttaaattcttaacttgctatct |
184 |
Q |
| |
|
||||||||| | ||||||||||| ||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
32852868 |
cttgaatttcaccacgaaaagctaattcattggaagatgtgtccaaatacacatatacattgtagatatatccatcttttaagttcttaacttgctatct |
32852967 |
T |
|
| Q |
185 |
aataggtactaagataccaaccacattagttttaagaactttatgaaactttagccacttttcat |
249 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32852968 |
gatgggtactaagataccaaccacatcagttttaagaactttatgaaactttagccacttttcat |
32853032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University