View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10579_high_2 (Length: 448)

Name: NF10579_high_2
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10579_high_2
NF10579_high_2
[»] chr7 (1 HSPs)
chr7 (8-432)||(2311319-2311743)
[»] chr4 (11 HSPs)
chr4 (243-367)||(30271223-30271347)
chr4 (243-367)||(30280842-30280966)
chr4 (243-367)||(30304290-30304414)
chr4 (263-370)||(30264349-30264456)
chr4 (263-370)||(30287732-30287839)
chr4 (261-375)||(30032299-30032413)
chr4 (261-367)||(30220274-30220380)
chr4 (261-375)||(30048545-30048659)
chr4 (261-375)||(30062886-30063000)
chr4 (261-375)||(30228684-30228798)
chr4 (14-133)||(30220508-30220627)
[»] scaffold0024 (2 HSPs)
scaffold0024 (276-366)||(79534-79624)
scaffold0024 (312-366)||(72506-72560)


Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 8 - 432
Target Start/End: Complemental strand, 2311743 - 2311319
Alignment:
Q  8 atatcataccactccaagcttggatttgatgtctttgatatgatcaatagagaatgcaatatttgaaatagaaataggttgaaaatcagctccttcatct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2311743 atatcataccactccaagcttggatttgatgtctttgatatgatcaatagagaatgcaatatttgaaatagaaataggttgaaaatcagctccttcatct 2311644  T
Q  108 ccagatcttataggagttttatcatcaacaataatgctactcttcaatacactccatccaaaatcagaggcagtattaaaaacagaagacatagtccaag 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2311643 ccagatcttataggagttttatcatcaacaataatgctactcttcaatacactccatccaaaatcagaggcagtattaaaaacagaagacatagtccaag 2311544  T
Q  208 aaaattttctccaaaaacttttattataaggttctaattttgatggtttaagagaaggaaaagacaaaggaagagatggatcatcagcacgttgtagaca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2311543 aaaattttctccaaaaacttttattataaggttctaattttgatggtttaagagaaggaaaagacaaaggaagagatggatcatcagcacgttgtagaca 2311444  T
Q  308 agaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatattattgtgcctaatgaattttttgtagggtagtttactatg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2311443 agaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatattattgtgcctaatgaattttttgtagggtagtttactatg 2311344  T
Q  408 tgaacttcccataatggtttccctt 432  Q
    |||||||||||||||||||||||||    
T  2311343 tgaacttcccataatggtttccctt 2311319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 243 - 367
Target Start/End: Original strand, 30271223 - 30271347
Alignment:
Q  243 aattttgatggtttaagagaaggaaaagacaaaggaagagatggatcatcagcacgttgtagacaagaaagaagtgcacccattagagaataaccatctc 342  Q
    |||| |||||||||  | ||||||||||||||||||||||| || |||||||| | |||||||||||||||||| |||||||| ||||| |||||||| |    
T  30271223 aattgtgatggtttgcgtgaaggaaaagacaaaggaagagaagggtcatcagctctttgtagacaagaaagaagagcacccatgagagagtaaccatcac 30271322  T
Q  343 caagtgcatggtgaagtttgaatat 367  Q
    |||||||||||||||||||||||||    
T  30271323 caagtgcatggtgaagtttgaatat 30271347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 243 - 367
Target Start/End: Complemental strand, 30280966 - 30280842
Alignment:
Q  243 aattttgatggtttaagagaaggaaaagacaaaggaagagatggatcatcagcacgttgtagacaagaaagaagtgcacccattagagaataaccatctc 342  Q
    |||| |||||||||  | ||||||||||||||||||||||| || |||||||| | |||||||||||||||||| |||||||| ||||| |||||||| |    
T  30280966 aattgtgatggtttgcgtgaaggaaaagacaaaggaagagaagggtcatcagctctttgtagacaagaaagaagagcacccatgagagagtaaccatcac 30280867  T
Q  343 caagtgcatggtgaagtttgaatat 367  Q
    |||||||||||||||||||||||||    
T  30280866 caagtgcatggtgaagtttgaatat 30280842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 243 - 367
Target Start/End: Original strand, 30304290 - 30304414
Alignment:
Q  243 aattttgatggtttaagagaaggaaaagacaaaggaagagatggatcatcagcacgttgtagacaagaaagaagtgcacccattagagaataaccatctc 342  Q
    |||| |||||||||  | ||||||||||||||||||||||| || |||||| | | |||||||||||||||||| |||||||| ||||| |||||||| |    
T  30304290 aattgtgatggtttgcgtgaaggaaaagacaaaggaagagaagggtcatcaactctttgtagacaagaaagaagagcacccatgagagagtaaccatcac 30304389  T
Q  343 caagtgcatggtgaagtttgaatat 367  Q
    |||||||||||||||||||||||||    
T  30304390 caagtgcatggtgaagtttgaatat 30304414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 263 - 370
Target Start/End: Original strand, 30264349 - 30264456
Alignment:
Q  263 aggaaaagacaaaggaagagatggatcatcagcacgttgtagacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttg 362  Q
    ||||||||||||||||||||| ||||||||||| |  || |||||||||||||| |||||||| ||||| |||||||| ||||||||||| |||||||||    
T  30264349 aggaaaagacaaaggaagagaaggatcatcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttg 30264448  T
Q  363 aatattat 370  Q
    ||||||||    
T  30264449 aatattat 30264456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 263 - 370
Target Start/End: Complemental strand, 30287839 - 30287732
Alignment:
Q  263 aggaaaagacaaaggaagagatggatcatcagcacgttgtagacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttg 362  Q
    ||||||||||||||||||||| ||||||||||| |  || |||||||||||||| |||||||| ||||| |||||||| ||||||||||| |||||||||    
T  30287839 aggaaaagacaaaggaagagaaggatcatcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttg 30287740  T
Q  363 aatattat 370  Q
    ||||||||    
T  30287739 aatattat 30287732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 261 - 375
Target Start/End: Original strand, 30032299 - 30032413
Alignment:
Q  261 gaaggaaaagacaaaggaagagatggatcatcagcacgttgtagacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtt 360  Q
    ||||||||||| ||||||||||| ||||||||||| | ||| |||||||||||||| |||||||| ||||| ||||| || ||||||||||| |||||||    
T  30032299 gaaggaaaagataaaggaagagaaggatcatcagctctttgaagacaagaaagaagagcacccatgagagagtaaccgtcaccaagtgcatgatgaagtt 30032398  T
Q  361 tgaatattattgtgc 375  Q
    |||||||||| ||||    
T  30032399 tgaatattatggtgc 30032413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 261 - 367
Target Start/End: Complemental strand, 30220380 - 30220274
Alignment:
Q  261 gaaggaaaagacaaaggaagagatggatcatcagcacgttgtagacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtt 360  Q
    ||||||||||| | ||||||||| ||||||||||| | ||| |||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||    
T  30220380 gaaggaaaagatagaggaagagaaggatcatcagctctttgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtt 30220281  T
Q  361 tgaatat 367  Q
    |||||||    
T  30220280 tgaatat 30220274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 261 - 375
Target Start/End: Original strand, 30048545 - 30048659
Alignment:
Q  261 gaaggaaaagacaaaggaagagatggatcatcagcacgttgtagacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtt 360  Q
    ||||||||||| | ||||||||| ||||||||||| | ||| |||||||||||||| |||||||| ||||| |||||||| |||||| |||| |||||||    
T  30048545 gaaggaaaagatagaggaagagaaggatcatcagctctttgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtccatgatgaagtt 30048644  T
Q  361 tgaatattattgtgc 375  Q
    |||||||||| ||||    
T  30048645 tgaatattatggtgc 30048659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 261 - 375
Target Start/End: Original strand, 30062886 - 30063000
Alignment:
Q  261 gaaggaaaagacaaaggaagagatggatcatcagcacgttgtagacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtt 360  Q
    ||||||||||| | ||||||||| ||||||||||| | ||| |||||||||||||| |||||||| ||||| |||||||| |||||| |||| |||||||    
T  30062886 gaaggaaaagatagaggaagagaaggatcatcagctctttgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtccatgatgaagtt 30062985  T
Q  361 tgaatattattgtgc 375  Q
    |||||||||| ||||    
T  30062986 tgaatattatggtgc 30063000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 261 - 375
Target Start/End: Original strand, 30228684 - 30228798
Alignment:
Q  261 gaaggaaaagacaaaggaagagatggatcatcagcacgttgtagacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtt 360  Q
    ||||||||||| | ||||||||| ||||||||||| | ||| |||||||||||||| |||| ||| ||||| |||||||| ||||||||||| | |||||    
T  30228684 gaaggaaaagatagaggaagagaaggatcatcagctctttgaagacaagaaagaagagcactcatgagagagtaaccatcaccaagtgcatgattaagtt 30228783  T
Q  361 tgaatattattgtgc 375  Q
    |||||||||| ||||    
T  30228784 tgaatattatggtgc 30228798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 30220627 - 30220508
Alignment:
Q  14 taccactccaagcttggatttgatgtctttgatatgatcaatagagaatgcaatatttgaaatagaaataggttgaaaatcagctccttcatctccagat 113  Q
    ||||||||||||||| |||||||| |||||||| ||||||| ||| ||||  || ||||| | || || ||| ||| | |||| |||||||| ||| |||    
T  30220627 taccactccaagctttgatttgatctctttgatttgatcaagagataatgatatgtttgacaaagtaaaaggctgagattcagttccttcatatcctgat 30220528  T
Q  114 cttataggagttttatcatc 133  Q
    |||||||| ||||| |||||    
T  30220527 cttataggtgttttgtcatc 30220508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 276 - 366
Target Start/End: Original strand, 79534 - 79624
Alignment:
Q  276 ggaagagatggatcatcagcacgttgtagacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaata 366  Q
    |||||||| || | |||||| | || || ||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  79534 ggaagagaagggttatcagctctttctaaacatgaaagaagtgcacccattagagagtaaccatctccaagtgcatgatgaagtttgaata 79624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 312 - 366
Target Start/End: Original strand, 72506 - 72560
Alignment:
Q  312 agaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaata 366  Q
    ||||| || ||||||||||| |||||||||||||||||||| |||||||||||||    
T  72506 agaagagctcccattagagagtaaccatctccaagtgcatgatgaagtttgaata 72560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University