View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_high_32 (Length: 237)
Name: NF10579_high_32
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_high_32 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38312240 - 38312461
Alignment:
| Q |
1 |
cataatgctcagcagcacactaccattactgtggctgctttagcttccattgtggccacaacatcagcctcgtcaacaccaatcaaggatgaaaagatag |
100 |
Q |
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| T |
38312240 |
cataatgctcagcagcacactactattactgtggctgctttagcttccattgtggccacaacagcagcctcgtcaacaccaatcaaggatgaaaagatag |
38312339 |
T |
|
| Q |
101 |
acaagacaaacatggatattgcttcggctgccatattagttacggtgcagtgtgttgaggctgccgaagcaatgtgagctaagcgcgacaaccttgcttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| |
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| T |
38312340 |
acaagacaaacatggatattgcttcggctgccatattagttacggtgcagtgtgttgaggctgccaaagcaatgtgagctaagtgttacaaccttgcttc |
38312439 |
T |
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| Q |
201 |
tgtggttagctcagctgcgaat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
38312440 |
tgtggttagctcagctgcgaat |
38312461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 38268539 - 38268688
Alignment:
| Q |
73 |
tcaacaccaatcaaggatgaaaagatagacaagacaaacatggatattgcttcggctgccatattagttacggtgcagtgtgttgaggctgccgaagcaa |
172 |
Q |
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||||||| || ||||||||| ||||| | ||||||| || ||| | ||||||||||||||| ||||| | | || ||||| |||||||||||||||| |
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| T |
38268539 |
tcaacacaaaacaaggatgagaagatggccaagacagacgtggctgttgcttcggctgccactctagttgccgcacaatgtgtggaggctgccgaagcaa |
38268638 |
T |
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| Q |
173 |
tgtgagctaagcgcgacaaccttgcttctgtggttagctcagctgcgaat |
222 |
Q |
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|| ||||| |||||||| ||||||| || ||||| |||||||||| |||| |
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| T |
38268639 |
tgggagctgagcgcgaccaccttgcatcggtggtcagctcagctgtgaat |
38268688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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